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Performance

I moved my domain to UpCloud (on the other side of the world) from Vultr (Sydney) and could not be happier with the performance.

June 8, 2019 by Simon

I moved my domain to UpCloud (on the other side of the world) from Vultr (Sydney) and could not be happier with the performance. Here is what I did to set up a complete Ubuntu 18.04 system (NGINX, PHP, MySQL, WordPress etc). This is not a paid review (just me documenting my steps over 2 days).

Background (CPanel hosts)

In 1999 I hosted my first domain (www.fearby.com) on a host in Seattle (for $10 USD a month), the host used CPanel and all was good.  After a decade I was using the domain more for online development and the website was now too slow (I think I was on dial-up or ADSL 1 at the time). I moved my domain to an Australian host (for $25 a month).

After 8 years the domain host was sold and performance remained mediocre. After another year the new host was sold again and performance was terrible.

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Page load times were near 30 seconds.

I started receiving Resource Limit Is Reached warnings (basically this was a plot by the new CPanel host to say “Pay us more and this message will go away”).

This is a screenshot of my old host giving a Usage Limit Exceeded error

The straw that broke the camel’s back was their demand of $150/year for a dodgy SSL certificate.

This is a screenshot of a crappy C rated SSL certificate (measured at ssl labs)

I needed to move to a self-managed server where I was in control.

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Buying a Domain Name

Buy a domain name from Namecheap here.

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Self Managed Server

I found a good web IDE ( http://www.c9.io/ ) that allowed me to connect to a cloud VM.  C9 allowed me to open many files and terminal windows and reconnect to them later. Don’t get excited, though, as AWS have purchased C9 and it’s not the same.

C9 IDE

C9 IDE

I spun up a Digital Ocean Server at the closest data centre in Singapore. Here was my setup guide creating a Digital Ocean VM, connecting to it with C9 and configuring it. I moved my email to G Suite and moved my WordPress to Digital Ocean (other guides here and here).

I was happy since I could now send emails via CLI/code, set up free SSL certs, add second domain email to G Suite and Secure G Suite. No more usage limit errors either.

Self-managing servers requires more work but it is more rewarding (flexible, faster and cheaper).  Page load times were now near 20 seconds (10-second improvement).

Latency Issue

Over 6 months, performance on Digital Ocean (in Singapore) from Australia started to drop (mentioned here).  I tried upgrading the memory but that did not help (latency was king).

Moved the website to Australia

I moved my domain to Vultr in Australia (guide here and here). All was good for a year until traffic growth started to increase.

Blog Growth

I tried upgrading the memory on Vultr and I setup PHP child workers, setup Cloudflare.

GT Metrix scores were about a “B” and Google Page Speed Scores were in the lower 40’s. Page loads were about 14 seconds (5-second improvement).

Tweaking WordPress

I set up an image compression plugin in WordPress then set up a cloud image compression and CDN Plugin from the same vendor.  Page Speed info here.

GT Metrix scores were now occasionally an “A” and Page Speed Scores were in the lower 20’s. Page loads were about 3-5 seconds (10-second improvement).

Mixed bag from Vultr (more optimisation and performance improvements were needed).

This screenshot is showing poor www.gtmetrix.com scores , pool google page speed index scores and upgrading from 1GB to 2GB memory on my server.

Google Chrome Developer Console Audit Results on Vultr hosted website were not very good (I stopped checking as nothing helped).

This is a screenshot showing poor site performance (screenshot taken in Google Dev tools audit feature)

The problem was the Vultr server (400km away in Sydney) was offline (my issue) and everything above (adding more memory, adding 2x CDN’s (EWWW and Cloudflare), adding PHP Child workers etc) did not seem to help???

Enter UpCloud…

Recently, a friend sent a link to a blog article about a host called “UpCloud” who promised “Faster than SSD” performance.  This can’t be right: “Faster than SSD”? I was intrigued. I wanted to check it out as I thought nothing was faster than SSD (well, maybe RAM).

I signed up for a trial and ran a disk IO test (read the review here) and I was shocked. It’s fast. Very fast.

Summary: UpCloud was twice as fast (Disk IO and CPU) as Vultr (+ an optional $4/m firewall and $3/m for 1x backup).

This is a screenshot showing Vultr.com servers getting half the read and write disk io performance compared to upcloud.com.

fyi: Labels above are K Bytes per second. iozone loops through all file sizes from 4 KB to 16,348 KB and measures through the reads per second. To be honest, the meaning of the numbers doesn’t interest me, I just want to compare apples to apples.

This is am image showing iozone results breakdown chart (kbytes per sec on vertical axis, file size in horizontal axis and transfer size on third access)

(image snip from http://www.iozone.org/ which explains the numbers)

I might have to copy my website on UpCloud and see how fast it is.

Where to Deploy and Pricing

UpCloud Pricing: https://www.upcloud.com/pricing/

UpCloud Pricing

UpCloud does not have a data centre in Australia yet so why choose UpCloud?

Most of my site’s visitors are based in the US and UpCloud have disk IO twice as fast as Vultr (win-win?).  I could deploy to Chicago?

This image sows most of my visitors are in the US

My site’s traffic is growing and I need to ensure the site is fast enough in the future.

This image shows that most of my sites visitors are hitting my site on week days.

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Creating an UpCloud VM

I used a friend’s referral code and signed up to create my first VM.

FYI: use my Referral code and get $25 free credit.  Sign up only takes 2 minutes.

https://www.upcloud.com/register/?promo=D84793

When you click the link above you will receive 25$ to try out serves for 3 days. You can exit his trail and deposit $10 into UpCloud.

Trial Limitations

The trial mode restrictions are as following:

* Cloud servers can only be accessed using SSH, RDP, HTTP or HTTPS protocols
* Cloud servers are not allowed to send outgoing e-mails or to create outbound SSH/RDP connections
* The internet connection is restricted to 100 Mbps (compared to 500 Mbps for non-trial accounts)
* After your 72 hours free trial, your services will be deleted unless you make a one-time deposit of $10

UpCloud Links

The UpCloud support page is located here: https://www.upcloud.com/support/

  • Quick start: Introduction to UpCloud
  • How to deploy a Cloud Server
  • Deploy a cloud server with UpCloud’s API

More UpCloud links to read:

  • Two-Factor Authentication on UpCloud
  • Floating IPs on UpCloud
  • How to manage your firewall
  • Finalizing deployment

Signing up to UpCloud

Navigate to https://upcloud.com/signup and add your username, password and email address and click signup.

New UpCloud Signup Page

Add your address and payment details and click proceed (you don’t need to pay anything ($1 may be charged and instantly refunded to verify the card)

Add address and payment details

That’s it, check yout email.

Signup Done

Look for the UpCloud email and click https://my.upcloud.com/

Check Email

Now login

Login to UpCloud

Now I can see a dashboard 🙂

UpCloud Dashboard

I was happy to see 24/7 support is available.

This image shows the www.upcloud.com live chat

I opted in for the new dashboard

UpCloud new new dashboard

Deploy My First UpCloud Server

This is how I deployed a server.

Note: If you are going to deploy a server consider using my referral code and get $25 credit for free.

Under the “deploy a server” widget I named the server and chose a location (I think I was supposed to use an FQDN name -e.g., “fearby.com”). The deployment worked though. I clicked continue, then more options were made available:

  1. Enter a short server description.
  2. Choose a location (Frankfurt, Helsinki, Amsterdam, Singapore, London and Chicago)
  3. Choose the number of CPU’s and amount of memory
  4. Specify disk number/names and type (MaxIOPS or HDD).
  5. Choose an Operating System
  6. Select a Timezone
  7. Define SSH Keys for access
  8. Allowed login methods
  9. Choose hardware adapter types
  10. Where the send the login password

Deploy Server

FYI: How to generate a new SSH Key (on OSX or Ubuntu)

ssh-keygen -t rsa

Output

Generating public/private rsa key pair.
Enter file in which to save the key (/root/.ssh/id_rsa): /temp/example_rsa
Enter passphrase (empty for no passphrase): *********************************
Enter same passphrase again:*********************************
Your identification has been saved in /temp/example_rsa.
Your public key has been saved in /temp/example_rsa.pub.
The key fingerprint is:
SHA256:########################### [email protected]
Outputted public and private key

Did the key export? (yes)

> /temp# ls /temp/ -al
> drwxr-xr-x 2 root root 4096 Jun 9 15:33 .
> drwxr-xr-x 27 root root 4096 Jun 8 14:25 ..
> -rw——- 1 user user 1766 Jun 9 15:33 example_rsa
> -rw-r–r– 1 user user 396 Jun 9 15:33 example_rsa.pub

“example_rsa” is the private key and “example_rsa.pub “is the public key.

  • The public key needs to be added to the server to allow access.
  • The private key needs to be added to any local ssh program used for remote access.

Initialisation script (after deployment)

I was pleased to see an initialization script section that calls actions after the server is deployed. I configured the initialisation script to pull down a few GB of backups from my Vultr website in Sydney (files now removed).

This was my Initialisation script:

#!/bin/bash
echo "Downloading the Vultr websites backups"
mkdir /backup
cd /backup
wget -o www-mysql-backup.sql https://fearby.com/.../www-mysql-backup.sql
wget -o www-blog-backup.zip https://fearby.com/.../www-blog-backup.zip

Confirm and Deploy

I clicked “Confirm and deploy” but I had an alert that said trial mode can only deploy servers up to 1024MB of memory.

This image shows I cant deploy servers with 2/GB in trial modeExiting UpCloud Trial Mode

I opened the dashboard and clicked My Account then Billing, I could see the $25 referral credit but I guess I can’t use that in Trial.

I exited trial mode by depositing $10 (USD).

View Billing Details

Make a manual 1-time deposit of $10 to exit trial mode.

Deposit $10 to exit the trial

FYI: Server prices are listed below (or view prices here).

UpCloud Pricing

Now I can go back and deploy the server with the same settings above (1x CPU, 2GB Memory, Ubuntu 18.04, MaxIOPS Storage etc)

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Deployment takes a few minutes and depending on how you specified a password may be emailed to you.

UpCloud Server Deployed

The server is now deployed; now I can connect to it with my SSH program (vSSH).  Simply add the server’s IP, username, password and the SSH private key (generated above) to your ssh program of choice.

fyi: The public key contents start with “ssh-rsa”.

This image shows me connecting to my sever via ssh

I noticed that the initialisation script downloaded my 2+GB of files already. Nice.

UpCloud Billing Breakdown

I can now see on the UpCloud billing page in my dashboard that credit is deducted daily (68c); at this rate, I have 49 days credit left?

Billing Breakdown

I can manually deposit funds or set up automatic payments at any time 🙂

UpCloud Backup Options

You do not need to setup backups but in case you want to roll back (if things stuff up), it is a good idea. Backups are an additional charge.

I have set up automatic daily backups with an auto deletion after 2 days

To view backup scheduled click on your deployed server then click backup

List of UpCloud Backups

Note: Backups are charged at $0.056 for every GB stored – so $5.60 for every 100GB per month (half that for 50GB etc)

You can take manual backups at any time (and only be charged for the hour)

UpCloud Firewall Options

I set up a firewall at UpCloud to only allow the minimum number of ports (UpCloud DNS, HTTP, HTTPS and My IP to port 22).  The firewall feature is charged at $0.0056 an hour ($4.03 a month)

I love the ability to set firewall rules on incoming, destination and outgoing ports.

To view your firewall click on your deployed server then click firewall

UpCloud firewall

Update: I modified my firewall to allow inbound ICMP (IPv4/IPv6) and UDP (IPv4/IPv6) packets.

(Note: Old firewall screenshot)

Firewall Rules Allow port 80, 443 and DNS

Because my internet provider has a dynamic IP, I set up a VPN with a static IP and whitelisted it for backdoor access.

Local Ubuntu ufw Firewall

I duplicated the rules in my local ufw (2nd level) firewall (and blocked mail)

sudo ufw status numbered
Status: active

     To                         Action      From
     --                         ------      ----
[ 1] 80                         ALLOW IN    Anywhere
[ 2] 443                        ALLOW IN    Anywhere
[ 3] 25                         DENY OUT    Anywhere                   (out)
[ 4] 53                         ALLOW IN    93.237.127.9
[ 5] 53                         ALLOW IN    93.237.40.9
[ 6] 22                         ALLOW IN    REMOVED (MY WHITELISTED IP))
[ 7] 80 (v6)                    ALLOW IN    Anywhere (v6)
[ 8] 443 (v6)                   ALLOW IN    Anywhere (v6)
[ 9] 25 (v6)                    DENY OUT    Anywhere (v6)              (out)
[10] 53                         ALLOW IN    2a04:3540:53::1
[11] 53                         ALLOW IN    2a04:3544:53::1

UpCloud Download Speeds

I pulled down a 1.8GB Ubuntu 18.08 Desktop ISO 3 times from gigenet.com and the file downloaded in 32 seconds (57MB/sec). Nice.

$/temp# wget http://mirrors.gigenet.com/ubuntu/18.04/ubuntu-18.04-desktop-amd64.iso
--2018-06-08 18:02:04-- http://mirrors.gigenet.com/ubuntu/18.04/ubuntu-18.04-desktop-amd64.iso
Resolving mirrors.gigenet.com (mirrors.gigenet.com)... 69.65.15.34
Connecting to mirrors.gigenet.com (mirrors.gigenet.com)|69.65.15.34|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1921843200 (1.8G) [application/x-iso9660-image]
Saving to: 'ubuntu-18.04-desktop-amd64.iso'

ubuntu-18.04-desktop-amd64.iso 100%[==================================================================>] 1.79G 57.0MB/s in 32s

2018-06-08 18:02:37 (56.6 MB/s) - 'ubuntu-18.04-desktop-amd64.iso' saved [1921843200/1921843200]

$/temp# wget http://mirrors.gigenet.com/ubuntu/18.04/ubuntu-18.04-desktop-amd64.iso
--2018-06-08 18:02:46-- http://mirrors.gigenet.com/ubuntu/18.04/ubuntu-18.04-desktop-amd64.iso
Resolving mirrors.gigenet.com (mirrors.gigenet.com)... 69.65.15.34
Connecting to mirrors.gigenet.com (mirrors.gigenet.com)|69.65.15.34|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1921843200 (1.8G) [application/x-iso9660-image]
Saving to: 'ubuntu-18.04-desktop-amd64.iso.1'

ubuntu-18.04-desktop-amd64.iso.1 100%[==================================================================>] 1.79G 57.0MB/s in 32s

2018-06-08 18:03:19 (56.6 MB/s) - 'ubuntu-18.04-desktop-amd64.iso.1' saved [1921843200/1921843200]

$/temp# wget http://mirrors.gigenet.com/ubuntu/18.04/ubuntu-18.04-desktop-amd64.iso
--2018-06-08 18:03:23-- http://mirrors.gigenet.com/ubuntu/18.04/ubuntu-18.04-desktop-amd64.iso
Resolving mirrors.gigenet.com (mirrors.gigenet.com)... 69.65.15.34
Connecting to mirrors.gigenet.com (mirrors.gigenet.com)|69.65.15.34|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1921843200 (1.8G) [application/x-iso9660-image]
Saving to: 'ubuntu-18.04-desktop-amd64.iso.2'

ubuntu-18.04-desktop-amd64.iso.2 100%[==================================================================>] 1.79G 57.0MB/s in 32s

2018-06-08 18:03:56 (56.8 MB/s) - 'ubuntu-18.04-desktop-amd64.iso.2' saved [1921843200/1921843200]

Install Common Ubuntu Packages

I installed common Ubuntu packages.

apt-get install zip htop ifstat iftop bmon tcptrack ethstatus speedometer iozone3 bonnie++ sysbench siege tree tree unzip jq jq ncdu pydf ntp rcconf ufw iperf nmap iozone3

Timezone

I checked the server’s time (I thought this was auto set before I deployed)?

$hwclock --show
2018-06-06 23:52:53.639378+0000

I reset the time to Australia/Sydney.

dpkg-reconfigure tzdata
Current default time zone: 'Australia/Sydney'
Local time is now: Thu Jun 7 06:53:20 AEST 2018.
Universal Time is now: Wed Jun 6 20:53:20 UTC 2018.

Now the timezone is set 🙂

Shell History

I increased the shell history.

HISTSIZEH =10000
HISTCONTROL=ignoredups

SSH Login

I created a ~/.ssh/authorized_keys file and added my SSH public key to allow password-less logins.

mkdir ~/.ssh
sudo nano ~/.ssh/authorized_keys

I added my pubic ssh key, then exited the ssh session and logged back in. I can now log in without a password.

Install NGINX

apt-get install nginx

nginx/1.14.0 is now installed.

A quick GT Metrix test.

This image shows awesome static nginx performance ratings of of 99%

Install MySQL

Run these commands to install and secure MySQL.

apt install mysql-server
mysql_secure_installation

Securing the MySQL server deployment.
> Would you like to setup VALIDATE PASSWORD plugin?: n
> New password: **********************************************
> Re-enter new password: **********************************************
> Remove anonymous users? (Press y|Y for Yes, any other key for No) : y
> Disallow root login remotely? (Press y|Y for Yes, any other key for No) : y
> Remove test database and access to it? (Press y|Y for Yes, any other key for No) : y
> Reload privilege tables now? (Press y|Y for Yes, any other key for No) : y
> Success.

I disabled the validate password plugin because I hate it.

MySQL Ver 14.14 Distrib 5.7.22 is now installed.

Set MySQL root login password type

Set MySQL root user to authenticate via “mysql_native_password”. Run the “mysql” command.

mysql
SELECT user,authentication_string,plugin,host FROM mysql.user;
+------------------+-------------------------------------------+-----------------------+-----------+
| user | authentication_string | plugin | host |
+------------------+-------------------------------------------+-----------------------+-----------+
| root | | auth_socket | localhost |
| mysql.session | hiddden | mysql_native_password | localhost |
| mysql.sys | hiddden | mysql_native_password | localhost |
| debian-sys-maint | hiddden | mysql_native_password | localhost |
+------------------+-------------------------------------------+-----------------------+----------

Now let’s set the root password authentication method to “mysql_native_password”

ALTER USER 'root'@'localhost' IDENTIFIED WITH mysql_native_password BY '*****************************************';
Query OK, 0 rows affected (0.00 sec)

Check authentication method.

mysql> SELECT user,authentication_string,plugin,host FROM mysql.user;
+------------------+-------------------------------------------+-----------------------+-----------+
| user | authentication_string | plugin | host |
+------------------+-------------------------------------------+-----------------------+-----------+
| root | ######################################### | mysql_native_password | localhost |
| mysql.session | hiddden | mysql_native_password | localhost |
| mysql.sys | hiddden | mysql_native_password | localhost |
| debian-sys-maint | hiddden | mysql_native_password | localhost |
+------------------+-------------------------------------------+-----------------------+-----------+

Now we need to flush permissions.

mysql> FLUSH PRIVILEGES;
Query OK, 0 rows affected (0.00 sec)

Done.

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Install PHP

Install PHP 7.2

apt-get install software-properties-common
add-apt-repository ppa:ondrej/php
apt-get update
apt-get install -y php7.2
php -v

PHP 7.2.5, Zend Engine v3.2.0 with Zend OPcache v7.2.5-1 is now installed. Do update PHP frequently.

I made the following changes in /etc/php/7.2/fpm/php.ini

> cgi.fix_pathinfo=0
> max_input_vars = 1000
> memory_limit = 1024M
> max_file_uploads = 20M
> post_max_size = 20M

Install PHP Modules

sudo apt-get install php-pear php7.2-curl php7.2-dev php7.2-mbstring php7.2-zip php7.2-mysql php7.2-xml

Install PHP FPM

apt-get install php7.2-fpm

Configure PHP FPM config.

Edit /etc/php/7.2/fpm/php.ini

> cgi.fix_pathinfo=0
> max_input_vars = 1000
> memory_limit = 1024M
> max_file_uploads = 20M
> post_max_size = 20M

Reload php sudo service.

php7.2-fpm restart service php7.2-fpm status

Install PHP Modules

sudo apt-get install php-pear php7.2-curl php7.2-dev php7.2-mbstring php7.2-zip php7.2-mysql php7.2-xml

Configuring NGINX

If you are not comfortable editing NGINX config files read here, here and here.

I made a new “www root” folder, set permissions and created a default html file.

mkdir /www-root
chown -R www-data:www-data /www-root
echo "Hello World" >> /www-root/index.html

I edited the “root” key in “/etc/nginx/sites-enabled/default” file and set the root a new location (e.g., “/www-root”)

I added these performance tweaks to /etc/nginx/nginx.conf

> worker_cpu_affinity auto;
> worker_rlimit_nofile 100000

I add the following lines to “http {” section in /etc/nginx/nginx.conf

client_max_body_size 10M;

gzip on;
gzip_disable "msie6";
gzip_comp_level 5;
gzip_min_length 256;
gzip_vary on;
gzip_types
application/atom+xml
application/ld+json
application/manifest+json
application/rss+xml
application/vnd.geo+json
application/vnd.ms-fontobject
application/x-font-ttf
application/x-web-app-manifest+json
application/xhtml+xml
font/opentype
image/bmp
image/x-icon
text/cache-manifest
text/vcard
text/vnd.rim.location.xloc
text/vtt
text/x-component
text/x-cross-domain-policy;
#text/html is always compressed by gzip module

gzip_proxied any;
gzip_buffers 16 8k;
gzip_http_version 1.1;
gzip_types text/plain text/css application/json application/javascript text/xml application/xml application/xml+rss te$

Check NGINX Status

service nginx status
* nginx.service - A high performance web server and a reverse proxy server
Loaded: loaded (/lib/systemd/system/nginx.service; enabled; vendor preset: enabled)
Active: active (running) since Thu 2018-06-07 21:16:28 AEST; 30min ago
Docs: man:nginx(8)
Main PID: # (nginx)
Tasks: 2 (limit: 2322)
CGroup: /system.slice/nginx.service
|- # nginx: master process /usr/sbin/nginx -g daemon on; master_process on;
`- # nginx: worker process

Install Open SSL that supports TLS 1.3

This is a work in progress. The steps work just fine for me on Ubuntu 16.04. but not Ubuntu 18.04.?

Installing Adminer MySQL GUI

I will use the PHP based Adminer MySQL GUI to export and import my blog from one server to another. All I needed to do is install it on both servers (simple 1 file download)

cd /utils
wget -o adminer.php https://github.com/vrana/adminer/releases/download/v4.6.2/adminer-4.6.2-mysql-en.php

Use Adminer to Export My Blog (on Vultr)

On the original server open Adminer (http) and..

  1. Login with the MySQL root account
  2. Open your database
  3. Choose “Save” as the output
  4. Click on Export

This image shows the export of the wordpress adminer page

Save the “.sql” file.

I used Adminer on the UpCloud server to Import My Blog

FYI: Depending on the size of your database backup you may need to temporarily increase your upload and post sizes limits in PHP and NGINX before you can import your database.

Edit /etc/php/7.2/fpm/php.ini
> max_file_uploads = 100M
> post_max_size =100M

And Edit: /etc/nginx/nginx.conf
> client_max_body_size 100M;

Don’t forget to reload NGINX config and restart NGINX and PHP. Take note of the maximum allowed file size in the screenshot below. I temporarily increased my upload limits to 100MB in order to restore my 87MB blog.

Now I could open Adminer on my UpCloud server.

  1. Create a new database
  2. Click on the database and click Import
  3. Choose the SQL file
  4. Click Execute to import it

Import MuSQL backup with Adminer

Don’t forget to create a user and assign permissions (as required – check your wp-config.php file).

Import MySQL Database

Tip: Don’t forget to lower the maximum upload file size and max post size after you import your database,

Cloudflare DNS

I use Cloudflare to manage DNS, so I need to tell it about my new server.

You can get your server’s IP details from the UpCloud dashboard.

Find IP

At Cloudflare update your DNS details to point to the server’s new IPv4 (“A Record”) and IPv6 (“AAAA Record”).

Cloudflare DNS

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Domain Error

I waited an hour and my website was suddenly unavailable.  At first, I thought this was Cloudflare forcing the redirection of my domain to HTTP (that was not yet set up).

DNS Not Replicated Yet

I chatted with UpCloud chat on their webpage and they kindly assisted me to diagnose all the common issues like DNS values, DNS replication, Cloudflare settings and the error was pinpointed to my NGINX installation.  All NGINX config settings were ok from what we could see?  I uninstalled NGINX and reinstalled it (and that fixed it). Thanks UpCloud Support 🙂

Reinstalled NGINX

sudo apt-get purge nginx nginx-common

I reinstalled NGINX and reconfigured /etc/nginx/nginx.conf (I downloaded my SSL cert from my old server just in case).

Here is my /etc/nginx/nginx.conf file.

user www-data;
worker_processes auto;
worker_cpu_affinity auto;
pid /run/nginx.pid;
include /etc/nginx/modules-enabled/*.conf;
error_log /var/log/nginx/www-nginxcriterror.log crit;

events {
        worker_connections 768;
        multi_accept on;
}

http {

        client_max_body_size 10M;
        sendfile on;
        tcp_nopush on;
        tcp_nodelay on;
        keepalive_timeout 65;
        types_hash_max_size 2048;
        server_tokens off;

        server_names_hash_bucket_size 64;
        server_name_in_redirect off;

        include /etc/nginx/mime.types;
        default_type application/octet-stream;

        ssl_protocols TLSv1.1 TLSv1.2;
        ssl_prefer_server_ciphers on;

        access_log /var/log/nginx/www-access.log;
        error_log /var/log/nginx/www-error.log;

        gzip on;

        gzip_vary on;
        gzip_disable "msie6";
        gzip_min_length 256;
        gzip_proxied any;
        gzip_comp_level 6;
        gzip_buffers 16 8k;
        gzip_http_version 1.1;
        gzip_types text/plain text/css application/json application/javascript text/xml application/xml application/xml+rss text/javascript;

        include /etc/nginx/conf.d/*.conf;
        include /etc/nginx/sites-enabled/*;
}

Here is my /etc/nginx/sites-available/default file (fyi, I have not fully re-setup TLS 1.3 yet so I commented out the settings)

proxy_cache_path /tmp/nginx-cache keys_zone=one:10m;#
server {
        root /www-root;

        # Listen Ports
        listen 80 default_server http2;
        listen [::]:80 default_server http2;
        listen 443 ssl default_server http2;
        listen [::]:443 ssl default_server http2;

        # Default File
        index index.html index.php index.htm;

        # Server Name
        server_name www.fearby.com fearby.com localhost;

        # HTTPS Cert
        ssl_certificate /etc/nginx/ssl-cert-path/fearby.crt;
        ssl_certificate_key /etc/nginx/ssl-cert-path/fearby.key;
        ssl_dhparam /etc/nginx/ssl-cert-path/dhparams4096.pem;

        # HTTPS Ciphers
        
        # TLS 1.2
        ssl_protocols TLSv1.2;
        ssl_prefer_server_ciphers on;
        ssl_ciphers "EECDH+AESGCM:EDH+AESGCM:AES256+EECDH:AES256+EDH";

        # TLS 1.3			#todo
        # ssl_ciphers 
        # ECDHE-RSA-AES256-GCM-SHA512:DHE-RSA-AES256-GCM-SHA512:ECDHE-RSA-AES256-GCM-SHA384:DHE-RSA-AES256-GCM-SHA384:ECDHE-RSA-AES256-SHA384:ECDHE-RSA-AES128-GCM-SHA256:ECDHE-ECDSA-AES128-GCM-SHA256:DES-CBC3-SHA;
        # ssl_ecdh_curve secp384r1;

        # Force HTTPS
        if ($scheme != "https") {
                return 301 https://$host$request_uri;
        }

        # HTTPS Settings
        server_tokens off;
        ssl_session_cache shared:SSL:10m;
        ssl_session_timeout 30m;
        ssl_session_tickets off;
        add_header Strict-Transport-Security "max-age=63072000; includeSubdomains; preload";
        add_header X-Frame-Options DENY;
        add_header X-Content-Type-Options nosniff;
        add_header X-XSS-Protection "1; mode=block";
	#ssl_stapling on; 						# Requires nginx >= 1.3.7

        # Cloudflare DNS
        resolver 1.1.1.1 1.0.0.1 valid=60s;
        resolver_timeout 1m;

        # PHP Memory 
        fastcgi_param PHP_VALUE "memory_limit = 1024M";

	# pass the PHP scripts to FastCGI server listening on 127.0.0.1:9000
        location ~ .php$ {
            try_files $uri =404;
            # include snippets/fastcgi-php.conf;

            fastcgi_split_path_info ^(.+.php)(/.+)$;
            fastcgi_index index.php;
            fastcgi_param SCRIPT_FILENAME $document_root$fastcgi_script_name;
            include fastcgi_params;
            fastcgi_pass unix:/run/php/php7.2-fpm.sock;

            # NOTE: You should have "cgi.fix_pathinfo = 0;" in php.ini
            # fastcgi_pass 127.0.0.1:9000;
	    }

        location / {
            # try_files $uri $uri/ =404;
            try_files $uri $uri/ /index.php?q=$uri&$args;
            index index.php index.html index.htm;
            proxy_set_header Proxy "";
        }

        # Deny Rules
        location ~ /.ht {
                deny all;
        }
        location ~ ^/.user.ini {
            deny all;
        }
        location ~ (.ini) {
            return 403;
        }

        # Headers
        location ~* .(?:ico|css|js|gif|jpe?g|png|js)$ {
            expires 30d;
            add_header Pragma public;
            add_header Cache-Control "public";
        }

}

SSL Labs SSL Certificate Check

All good thanks to the config above.

SSL Labs

Install WP-CLI

I don’t like setting up FTP to auto-update WordPress plugins. I use the WP-CLI tool to manage WordPress installations by the command line. Read my blog here on using WP-CLI.

Download WP-CLI

mkdir /utils
cd /utils
curl -O https://raw.githubusercontent.com/wp-cli/builds/gh-pages/phar/wp-cli.phar

Move WP-CLI to the bin folder as “wp”

chmod +x wp-cli.phar
sudo mv wp-cli.phar /usr/local/bin/wp

Test wp

wp --info
OS: Linux 4.15.0-22-generic #24-Ubuntu SMP Wed May 16 12:15:17 UTC 2018 x86_64
Shell: /bin/bash
PHP binary: /usr/bin/php7.2
PHP version: 7.2.5-1+ubuntu18.04.1+deb.sury.org+1
php.ini used: /etc/php/7.2/cli/php.ini
WP-CLI root dir: phar://wp-cli.phar
WP-CLI vendor dir: phar://wp-cli.phar/vendor
WP_CLI phar path: /www-root
WP-CLI packages dir:
WP-CLI global config:
WP-CLI project config:
WP-CLI version: 1.5.1

Update WordPress Plugins

Now I can run “wp plugin update” to update all WordPress plugins

wp plugin update
Enabling Maintenance mode...
Downloading update from https://downloads.wordpress.org/plugin/wordfence.7.1.7.zip...
Unpacking the update...
Installing the latest version...
Removing the old version of the plugin...
Plugin updated successfully.
Downloading update from https://downloads.wordpress.org/plugin/wp-meta-seo.3.7.1.zip...
Unpacking the update...
Installing the latest version...
Removing the old version of the plugin...
Plugin updated successfully.
Downloading update from https://downloads.wordpress.org/plugin/wordpress-seo.7.6.1.zip...
Unpacking the update...
Installing the latest version...
Removing the old version of the plugin...
Plugin updated successfully.
Disabling Maintenance mode...
Success: Updated 3 of 3 plugins.
+---------------+-------------+-------------+---------+
| name | old_version | new_version | status |
+---------------+-------------+-------------+---------+
| wordfence | 7.1.6 | 7.1.7 | Updated |
| wp-meta-seo | 3.7.0 | 3.7.1 | Updated |
| wordpress-seo | 7.5.3 | 7.6.1 | Updated |
+---------------+-------------+-------------+---------+

Update WordPress Core

WordPress core file can be updated with “wp core update”

wp core update
Success: WordPress is up to date.

Troubleshooting: Use the flag “–allow-root “if wp needs higher access (unsafe action though).

Install PHP Child Workers

I edited the following file to setup PHP child workers /etc/php/7.2/fpm/pool.d/www.conf

Changes

> pm = dynamic
> pm.max_children = 40
> pm.start_servers = 15
> pm.min_spare_servers = 5
> pm.max_spare_servers = 15
> pm.process_idle_timeout = 30s;
> pm.max_requests = 500;
> php_admin_value[error_log] = /var/log/www-fpm-php.www.log
> php_admin_value[memory_limit] = 512M

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Restart PHP

sudo service php7.2-fpm restart

Test NGINX config, reload NGINX config and restart NGINX

nginx -t
nginx -s reload
/etc/init.d/nginx restart

Output (14 workers are ready)

Check PHP Child Worker Status

sudo service php7.2-fpm status
* php7.2-fpm.service - The PHP 7.2 FastCGI Process Manager
Loaded: loaded (/lib/systemd/system/php7.2-fpm.service; enabled; vendor preset: enabled)
Active: active (running) since Thu 2018-06-07 19:32:47 AEST; 20s ago
Docs: man:php-fpm7.2(8)
Main PID: # (php-fpm7.2)
Status: "Processes active: 0, idle: 15, Requests: 2, slow: 0, Traffic: 0.1req/sec"
Tasks: 16 (limit: 2322)
CGroup: /system.slice/php7.2-fpm.service
|- # php-fpm: master process (/etc/php/7.2/fpm/php-fpm.conf)
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
|- # php-fpm: pool www
- # php-fpm: pool www

Memory Tweak (set at your own risk)

sudo nano /etc/sysctl.conf

vm.swappiness = 1

Setting swappiness to a value of 1 all but disables the swap file and tells the Operating System to aggressively use ram, a value of 10 is safer. Only set this if you have enough memory available (and free).

Possible swappiness settings:

> vm.swappiness = 0 Swap is disabled. In earlier versions, this meant that the kernel would swap only to avoid an out of memory condition when free memory will be below vm.min_free_kbytes limit, but in later versions, this is achieved by setting to 1.[2]> vm.swappiness = 1 Kernel version 3.5 and over, as well as Red Hat kernel version 2.6.32-303 and over: Minimum amount of swapping without disabling it entirely.
> vm.swappiness = 10 This value is sometimes recommended to improve performance when sufficient memory exists in a system.[3]
> vm.swappiness = 60 The default value.
> vm.swappiness = 100 The kernel will swap aggressively.

The “htop” tool is a handy memory monitoring tool to “top”

Also you can use good old “watch” command to show near-live memory usage (auto-refreshes every 2 seconds)

watch -n 2 free -m

Script to auto-clear the memory/cache

As a habit, I am setting up a cronjob to check when free memory falls below 100MB, then cache is automatically cleared (freeing memory).

Script Contents: clearcache.sh

#!/bin/bash

# Script help inspired by https://unix.stackexchange.com/questions/119126/command-to-display-memory-usage-disk-usage-and-cpu-load
ram_use=$(free -m)
IFS=

I set the cronjob to run every 15 mins, I added this to my cronjob.

SHELL=/bin/bash
*/15  *  *  *  *  root /bin/bash /scripts/clearcache.sh >> /scripts/clearcache.log

Sample log output

2018-06-10 01:13:22 RAM OK (Total: 1993 MB, Used: 981 MB, Free: 387 MB)
2018-06-10 01:15:01 RAM OK (Total: 1993 MB, Used: 974 MB, Free: 394 MB)
2018-06-10 01:20:01 RAM OK (Total: 1993 MB, Used: 955 MB, Free: 412 MB)
2018-06-10 01:25:01 RAM OK (Total: 1993 MB, Used: 1002 MB, Free: 363 MB)
2018-06-10 01:30:01 RAM OK (Total: 1993 MB, Used: 970 MB, Free: 394 MB)
2018-06-10 01:35:01 RAM OK (Total: 1993 MB, Used: 963 MB, Free: 400 MB)
2018-06-10 01:40:01 RAM OK (Total: 1993 MB, Used: 976 MB, Free: 387 MB)
2018-06-10 01:45:01 RAM OK (Total: 1993 MB, Used: 985 MB, Free: 377 MB)
2018-06-10 01:50:01 RAM OK (Total: 1993 MB, Used: 983 MB, Free: 379 MB)
2018-06-10 01:55:01 RAM OK (Total: 1993 MB, Used: 979 MB, Free: 382 MB)
2018-06-10 02:00:01 RAM OK (Total: 1993 MB, Used: 980 MB, Free: 380 MB)
2018-06-10 02:05:01 RAM OK (Total: 1993 MB, Used: 971 MB, Free: 389 MB)
2018-06-10 02:10:01 RAM OK (Total: 1993 MB, Used: 983 MB, Free: 376 MB)
2018-06-10 02:15:01 RAM OK (Total: 1993 MB, Used: 967 MB, Free: 392 MB)

I will check the log (/scripts/clearcache.log) in a few days and view the memory trends.

After 1/2 a day Ubuntu 18.04 is handling memory just fine, no externally triggered cache clears have happened 🙂

Free memory over time

I used https://crontab.guru/every-hour to set the right schedule in crontab.

I rebooted the VM.

Update: I now use Nixstats monitoring

Swap File

FYI: Here is a handy guide on viewing swap file usage here. I’m not using swap files so it is only an aside.

After the system rebooted I checked if the swappiness setting was active.

sudo cat /proc/sys/vm/swappiness
1

Yes, swappiness is set.

File System Tweaks – Write Back Cache (set at your own risk)

First, check your disk name and file system

sudo lsblk -o NAME,FSTYPE,SIZE,MOUNTPOINT,LABEL

Take note of your disk name (e.g vda1)

I used TuneFS to enable writing data to the disk before writing to the journal. tunefs is a great tool for setting file system parameters.

Warning (snip from here): “I set the mode to journal_data_writeback. This basically means that data may be written to the disk before the journal. The data consistency guarantees are the same as the ext3 file system. The downside is that if your system crashes before the journal gets written then you may loose new data — the old data may magically reappear.”

Warning this can corrupt your data. More information here.

I ran this command.

tune2fs -o journal_data_writeback /dev/vda1

I edited my fstab to append the “writeback,noatime,nodiratime” flags for my volume after a reboot.

Edit FS Tab:

sudo nano /etc/fstab

I added “writeback,noatime,nodiratime” flags to my disk options.

# /etc/fstab: static file system information.
#
# Use 'blkid' to print the universally unique identifier for a
# device; this may be used with UUID= as a more robust way to name devices
# that works even if disks are added and removed. See fstab(5).
#
# <file system> <mount point>   <type>  <options> <dump>  <pass>
# / was on /dev/vda1 during installation
#                <device>                 <dir>           <fs>    <options>                                             <dump>  <fsck>
UUID=xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx /               ext4    errors=remount-ro,data=writeback,noatime,nodiratime   0       1

Updating Ubuntu Packages

Show updatable packages.

apt-get -s dist-upgrade | grep "^Inst"

Update Packages.

sudo apt-get update && sudo apt-get upgrade

Unattended Security Updates

Read more on Ubuntu 18.04 Unattended upgrades here, here and here.

Install Unattended Upgrades

sudo apt-get install unattended-upgrades

Enable Unattended Upgrades.

sudo dpkg-reconfigure --priority=low unattended-upgrades

Now I configure what packages not to auto update.

Edit /etc/apt/apt.conf.d/50unattended-upgrades

Find “Unattended-Upgrade::Package-Blacklist” and add packages that you don’t want automatically updated, you may want to manually update these (and monitor updates).

I prefer not to auto-update critical system apps (I will do this myself).

Unattended-Upgrade::Package-Blacklist {
"nginx";
"nginx-common";
"nginx-core";
"php7.2";
"php7.2-fpm";
"mysql-server";
"mysql-server-5.7";
"mysql-server-core-5.7";
"libssl1.0.0";
"libssl1.1";
};

FYI: You can find installed packages by running this command:

apt list --installed

Enable automatic updates by editing /etc/apt/apt.conf.d/20auto-upgrades

Edit the number at the end (the number is how many days to wait before updating) of each line.

> APT::Periodic::Update-Package-Lists “1”;
> APT::Periodic::Download-Upgradeable-Packages “1”;
> APT::Periodic::AutocleanInterval “7”;
> APT::Periodic::Unattended-Upgrade “1”;

Set to “0” to disable automatic updates.

The results of unattended-upgrades will be logged to /var/log/unattended-upgrades

Update packages now.

unattended-upgrade -d

Almost done.

I Rebooted

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GT Metrix Score

I almost fell off my chair. It’s an amazing feeling hitting refresh in GT Metrix and getting sub-2-second score consistently (and that is with 17 assets loading and 361KB of HTML content)

0.9sec load times

WebPageTest.org Test Score

Nice. I am not sure why the effective use of CDN has an X rating as I have the EWWW CDN and Cloudflare. First Byte time is now a respectable “B”, This was always bad.

Update: I found out the longer you set cache delays in Cloudflare the higher the score.

Web Page Test

GT Metrix has a nice historical breakdown of load times (night and day).

Upcloud Site Speed in GTMetrix

Google Page Speed Insight Desktop Score

I benchmarked with https://developers.google.com/speed/pagespeed/insights/

This will help with future SEO rankings. It is well known that Google is pushing fast servers.

100% Desktop page speed score

Google Chrome 70 Dev Console Audit (Desktop)

100% Chrome Audit Score

This is amazing, I never expected to get this high score.  I know Google like (and are pushing) sub-1-second scores.

My site is loading so well it is time I restored some old features that were too slow on other servers

  • I disabled Lazy loading of images (this was not working on some Android devices)
  • I re-added the News Widget and news images.

GTMetrix and WebpageTest sores are still good (even after adding bloat)

Benchmarks are still good

My WordPress site is not really that small either

Large website

FYI: WordPress Plugins I use.

These are the plugins I use.

  • Autoptimize – Optimises your website, concatenating the CSS and JavaScript code, and compressing it.
  • BJ Lazy Load (Now Disabled) – Lazy image loading makes your site load faster and saves bandwidth.
  • Cloudflare – Cloudflare speeds up and protects your WordPress site.
  • Contact Form 7 – Just another contact form plugin. Simple but flexible.
  • Contact Form 7 Honeypot – Add honeypot anti-spam functionality to the popular Contact Form 7 plugin.
  • Crayon Syntax Highlighter – Supports multiple languages, themes, highlighting from a URL, local file or post text.
  • Democracy Poll – Allows to create democratic polls. Visitors can vote for more than one answer & add their own answers.
  • Display Posts Shortcode – Display a listing of posts using the
    • Monitoring cronjobs on Linux
    • I moved my domain to UpCloud (on the other side of the world) from Vultr (Sydney) and could not be happier with the performance.
    • Backing up files to a Backblaze B2 Cloud Bucket with Duplicati
    • Backing up your computer automatically with BackBlaze software (no data limit)
    • How to back up an iPhone (including photos and videos) multiple ways
    • US v Huawei: The battle for 5G
    • How to backup and restore a MySQL database on Windows and Linux
    • Setting up the free MySQL database server on Windows 10
    • Using the WinSCP Client on Windows to transfer files to and from a Linux server over SFTP
    • Connecting to a server via SSH with Putty
    shortcode
  • EWWW Image Optimizer – Reduce file sizes for images within WordPress including NextGEN Gallery and GRAND FlAGallery. Uses jpegtran, optipng/pngout, and gifsicle.
  • GDPR Cookie Consent – A simple way to show that your website complies with the EU Cookie Law / GDPR.
  • GTmetrix for WordPress – GTmetrix can help you develop a faster, more efficient, and all-around improved website experience for your users. Your users will love you for it.
  • TinyMCE Advanced – Enables advanced features and plugins in TinyMCE, the visual editor in WordPress.
  • Wordfence Security – Anti-virus, Firewall and Malware Scan
  • WP Meta SEO – WP Meta SEO is a plugin for WordPress to fill meta for content, images and main SEO info in a single view.
  • WP Performance Score Booster – Speed-up page load times and improve website scores in services like PageSpeed, YSlow, Pingdom and GTmetrix.
  • WP SEO HTML Sitemap – A responsive HTML sitemap that uses all of the settings for your XML sitemap in the WordPress SEO by Yoast Plugin.
  • WP-Optimize – WP-Optimize is WordPress’s #1 most installed optimisation plugin. With it, you can clean up your database easily and safely, without manual queries.
  • WP News and Scrolling Widgets Pro – WP News Pro plugin with six different types of shortcode and seven different types of widgets. Display News posts with various designs.
  • Yoast SEO – The first true all-in-one SEO solution for WordPress, including on-page content analysis, XML sitemaps and much more.
  • YouTube – YouTube Embed and YouTube Gallery WordPress Plugin. Embed a responsive video, YouTube channel, playlist gallery, or live stream

How I use these plugins to speed up my site.

  • I use EWWW Image Optimizer plugin to auto-compress my images and to provide a CDN for media asset deliver (pre-Cloudflare). Learn more about ExactDN and EWWW.io here.
  • I use Autoptimize plugin to optimise HTML/CSS/JS and ensure select assets are on my EWWW CDN. This plugin also removes WordPress Emojis, removed the use of Google Fonts, allows you to define pre-configured domains, Async Javascript-files etc.
  • I use BJ Lazy Load to prevent all images in a post from loading on load (and only as the user scrolls down the page).
  • GTmetrix for WordPress and Cloudflare plugins are for information only?
  • I use WP-Optimize to ensure my database is healthy and to disable comments/trackbacks and pingbacks.

Let’s Test UpCloud’s Disk IO in Chicago

Looks good to me, Read IO is a little bit lower than UpCloud’s Singapore data centre but still, it’s faster than Vultr.  I can’t wait for more data centres to become available around the world.

Why is UpCloud Disk IO so good?

I asked UpCloud on Twitter why the Disk IO was so good.

  • “MaxIOPS is UpCloud’s proprietary block-storage technology. MaxIOPS is physically redundant storage technology where all customer’s data is located in two separate physical devices at all times. UpCloud uses InfiniBand (!) network to connect storage backends to compute nodes, where customers’ cloud servers are running. All disks are enterprise-grade SSD’s. And using separate storage backends, it allows us to live migrate our customers’ cloud servers freely inside our infrastructure between compute nodes – whether it be due to hardware malfunction (compute node) or backend software updates (example CPU vulnerability and immediate patching).“

My Answers to Questions to support

Q1) What’s the difference between backups and snapshots (a Twitter user said Snapshots were a thing)

A1) Backups and snapshots are the same things with our infrastructure.

Q2) What are charges for backup of a 50GB drive?

A2) We charge $0.06 / GB of the disk being captured. But capture the whole disk, not just what was used. So for a 50GB drive, we charge $0.06 * 50 = $3/month. Even if 1GB were only used.

  • Support confirmed that each backup is charged (so 5 times manual backups are charged 5 times). Setting up a daily auto backup schedule for 2 weeks would create 14 billable backup charges.
  • I guess a 25GB server will be $1.50 a month

Q3) What are data charges if I go over my 2TB quota?

A3) Outgoing data charges are $0.056/GB after the pre-configured allowance.

Q4) What happens if my balance hits $0?

A4) You will get notification of low account balance 2 weeks in advance based on your current daily spend. When your balance reaches zero, your servers will be shut down. But they will still be charged for. You can automatically top-up if you want to assign a payment type from your Control Panel. You deposit into your balance when you want. We use a prepay model of payment, so you need to top up before using, not billing you after usage. We give you lots of chances to top-up.

Support Tips

  • One thing to note, when deleting servers (CPU, RAM) instances, you get the option to delete the storages separately via a pop-up window. Choose to delete permanently to delete the disk, to save credit. Any disk storage lying around even unattached to servers will be billed.
  • Charges are in USD.

I think it’s time to delete my domain from Vultr in Sydney.

Deleted my Vultr domain

I deleted my Vultr domain.

Delete Vultr Server

Done.

More Reading on UpCloud

https://www.upcloud.com/documentation/faq/

UpCloud Server Status

http://status.upcloud.com

Check out my new guide on Nixstats for awesome monitoring

What I would like

  1. Ability to name individual manual backups (tag with why I backed up).
  2. Ability to push user defined data from my VM to the dashboard
  3. Cheaper scheduled backups
  4. Sydney data centres (one day)

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Update: Post UpCloud Launch Tweaks (Awesome)

I had a look at https://www.webpagetest.org/ results to see where else I can optimise webpage delivery.

Optimisation Options

Disable dasjhicons.min.css (for unauthenticated WordPress users).

Find functions.php in the www root

sudo find . -print |grep  functions.php

Edit functions.php

sudo nano ./wp-includes/functions.php

Add the following

// Remove dashicons in frontend for unauthenticated users
add_action( 'wp_enqueue_scripts', 'bs_dequeue_dashicons' );
function bs_dequeue_dashicons() {
    if ( ! is_user_logged_in() ) {
        wp_deregister_style( 'dashicons' );
    }
}

HTTP2 Push

  • Introducing HTTP/2 Server Push with NGINX 1.13.9 | NGINX
  • How To Set Up Nginx with HTTP/2 Support on Ubuntu 16.04 | DigitalOcean

I added http2 to my listening servers

server {
        root /www;

        ...
        listen 80 default_server http2;
        listen [::]:80 default_server http2;
        listen 443 ssl default_server http2;
        listen [::]:443 ssl default_server http2;
        ...

I tested a http2 push page by defining this in /etc/nginx/sites-available/default 

location = /http2/push_demo.html {
        http2_push /http2/pushed.css;
        http2_push /http2/pushedimage1.jpg;
        http2_push /http2/pushedimage2.jpg;
        http2_push /http2/pushedimage3.jpg;
}

Once I tested that push (demo here) was working I then defined two files to push that were being sent from my server

location / {
        ...
        http2_push /https://fearby.com/wp-includes/js/jquery/jquery.js;
        http2_push /wp-content/themes/news-pro/images/favicon.ico;
        ...
}

I used the WordPress Plugin Autoptimize to remove Google font usage (this removed a number of files being loaded when my page loads).

I used the WordPress Plugin WP-Optimize plugin into to remove comments and disable pingbacks and trackbacks.

WordPress wp-config.php tweaks

# Memory
define('WP_MEMORY_LIMIT','1024M');
define('WP_MAX_MEMORY_LIMIT','1024M');
set_time_limit (60);

# Security
define( 'FORCE_SSL_ADMIN', true);

# Disable Updates
define( 'WP_AUTO_UPDATE_CORE', false );
define( 'AUTOMATIC_UPDATER_DISABLED', true );

# ewww.io
define( 'WP_AUTO_UPDATE_CORE', false );

Add 2FA Authentication to server logins.

I recently checked out YubiCo YubiKeys and I have secured my Linux servers with 2FA prompts at login. Read the guide here. I secured my WordPress too.

Tweaks Todo

  • Compress placeholder BJ Lazy Load Image (plugin is broken)
  • Solve 2x Google Analytics tracker redirects (done, switched to Matomo)

Conclusion

I love UpCloud’s fast servers, give them a go (use my link and get $25 free credit).

I love Cloudflare for providing a fast CDN.

I love ewww.io’s automatic Image Compression and Resizing plugin that automatically handles image optimisations and pre Cloudflare/first hit CDN caching.

Read my post about server monitoring with Nixstats here.

Let the results speak for themselves (sub <1 second load times).

Results

I hope this guide helps someone.

Please consider using my referral code and get $25 credit for free.

https://www.upcloud.com/register/?promo=D84793

Ask a question or recommend an article

[contact-form-7 404 "Not Found"]

Revision History

v2.1 Newer GTMetrix scores

v2.0 New UpCloud UI Update and links to new guides.

v1.9 Spelling and grammar

v1.8 Trial mode gotcha (deposit money ASAP)

v1.7 Added RSA Private key info

v1.7 – Added new firewall rules info.

v1.6 – Added more bloat to the site, still good.

v1.5 Improving Accessibility

v1.4 Added Firewall Price

v1.3 Added wp-config and plugin usage descriptions.

v1.2 Added GTMetrix historical chart.

v1.1 Fixed free typos and added final conclusion images.

v1.0 Added final results

v0.9 added more tweaks (http2 push, removing unwanted files etc)

v0.81 Draft  – Added memory usage chart and added MaxIOPS info from UpCloud.

v0.8 Draft post.

n' read -rd '' -a ram_use_arr <<< "$ram_use" ram_use="${ram_use_arr[1]}" ram_use=$(echo "$ram_use" | tr -s " ") IFS=' ' read -ra ram_use_arr <<< "$ram_use" ram_total="${ram_use_arr[1]}" ram_used="${ram_use_arr[2]}" ram_free="${ram_use_arr[3]}" d=`date '+%Y-%m-%d %H:%M:%S'` if ! [[ "$ram_free" =~ ^[0-9]+$ ]]; then echo "Sorry ram_free is not an integer" else if [ "$ram_free" -lt "100" ]; then echo "$d RAM LOW (Total: $ram_total MB, Used: $ram_used MB, Free: $ram_free MB) - Clearing Cache..." sync; echo 1 > /proc/sys/vm/drop_caches sync; echo 2 > /proc/sys/vm/drop_caches #sync; echo 3 > /proc/sys/vm/drop_caches #Not advised in production # Read for more info https://www.tecmint.com/clear-ram-memory-cache-buffer-and-swap-space-on-linux/ exit 1 else if [ "$ram_free" -lt "256" ]; then echo "$d RAM ALMOST LOW (Total: $ram_total MB, Used: $ram_used MB, Free: $ram_free MB)" exit 1 else if [ "$ram_free" -lt "512" ]; then echo "$d RAM OK (Total: $ram_total MB, Used: $ram_used MB, Free: $ram_free MB)" exit 1 else echo "$d RAM LOW (Total: $ram_total MB, Used: $ram_used MB, Free: $ram_free MB)" exit 1 fi fi fi fi

I set the cronjob to run every 15 mins, I added this to my cronjob.

Sample log output

I will check the log (/scripts/clearcache.log) in a few days and view the memory trends.

After 1/2 a day Ubuntu 18.04 is handling memory just fine, no externally triggered cache clears have happened 🙂

Free memory over time

I used https://crontab.guru/every-hour to set the right schedule in crontab.

I rebooted the VM.

Update: I now use Nixstats monitoring

Swap File

FYI: Here is a handy guide on viewing swap file usage here. I’m not using swap files so it is only an aside.

After the system rebooted I checked if the swappiness setting was active.

Yes, swappiness is set.

File System Tweaks – Write Back Cache (set at your own risk)

First, check your disk name and file system

Take note of your disk name (e.g vda1)

I used TuneFS to enable writing data to the disk before writing to the journal. tunefs is a great tool for setting file system parameters.

Warning (snip from here): “I set the mode to journal_data_writeback. This basically means that data may be written to the disk before the journal. The data consistency guarantees are the same as the ext3 file system. The downside is that if your system crashes before the journal gets written then you may loose new data — the old data may magically reappear.”

Warning this can corrupt your data. More information here.

I ran this command.

I edited my fstab to append the “writeback,noatime,nodiratime” flags for my volume after a reboot.

Edit FS Tab:

I added “writeback,noatime,nodiratime” flags to my disk options.

Updating Ubuntu Packages

Show updatable packages.

Update Packages.

Unattended Security Updates

Read more on Ubuntu 18.04 Unattended upgrades here, here and here.

Install Unattended Upgrades

Enable Unattended Upgrades.

Now I configure what packages not to auto update.

Edit /etc/apt/apt.conf.d/50unattended-upgrades

Find “Unattended-Upgrade::Package-Blacklist” and add packages that you don’t want automatically updated, you may want to manually update these (and monitor updates).

I prefer not to auto-update critical system apps (I will do this myself).

FYI: You can find installed packages by running this command:

Enable automatic updates by editing /etc/apt/apt.conf.d/20auto-upgrades

Edit the number at the end (the number is how many days to wait before updating) of each line.

> APT::Periodic::Update-Package-Lists “1”;
> APT::Periodic::Download-Upgradeable-Packages “1”;
> APT::Periodic::AutocleanInterval “7”;
> APT::Periodic::Unattended-Upgrade “1”;

Set to “0” to disable automatic updates.

The results of unattended-upgrades will be logged to /var/log/unattended-upgrades

Update packages now.

Almost done.

I Rebooted

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GT Metrix Score

I almost fell off my chair. It’s an amazing feeling hitting refresh in GT Metrix and getting sub-2-second score consistently (and that is with 17 assets loading and 361KB of HTML content)

0.9sec load times

WebPageTest.org Test Score

Nice. I am not sure why the effective use of CDN has an X rating as I have the EWWW CDN and Cloudflare. First Byte time is now a respectable “B”, This was always bad.

Update: I found out the longer you set cache delays in Cloudflare the higher the score.

Web Page Test

GT Metrix has a nice historical breakdown of load times (night and day).

Upcloud Site Speed in GTMetrix

Google Page Speed Insight Desktop Score

I benchmarked with https://developers.google.com/speed/pagespeed/insights/

This will help with future SEO rankings. It is well known that Google is pushing fast servers.

100% Desktop page speed score

Google Chrome 70 Dev Console Audit (Desktop)

100% Chrome Audit Score

This is amazing, I never expected to get this high score.  I know Google like (and are pushing) sub-1-second scores.

My site is loading so well it is time I restored some old features that were too slow on other servers

  • I disabled Lazy loading of images (this was not working on some Android devices)
  • I re-added the News Widget and news images.

GTMetrix and WebpageTest sores are still good (even after adding bloat)

Benchmarks are still good

My WordPress site is not really that small either

Large website

FYI: WordPress Plugins I use.

These are the plugins I use.

  • Autoptimize – Optimises your website, concatenating the CSS and JavaScript code, and compressing it.
  • BJ Lazy Load (Now Disabled) – Lazy image loading makes your site load faster and saves bandwidth.
  • Cloudflare – Cloudflare speeds up and protects your WordPress site.
  • Contact Form 7 – Just another contact form plugin. Simple but flexible.
  • Contact Form 7 Honeypot – Add honeypot anti-spam functionality to the popular Contact Form 7 plugin.
  • Crayon Syntax Highlighter – Supports multiple languages, themes, highlighting from a URL, local file or post text.
  • Democracy Poll – Allows to create democratic polls. Visitors can vote for more than one answer & add their own answers.
  • Display Posts Shortcode – Display a listing of posts using the
    • Monitoring cronjobs on Linux
    • I moved my domain to UpCloud (on the other side of the world) from Vultr (Sydney) and could not be happier with the performance.
    • Backing up files to a Backblaze B2 Cloud Bucket with Duplicati
    • Backing up your computer automatically with BackBlaze software (no data limit)
    • How to back up an iPhone (including photos and videos) multiple ways
    • US v Huawei: The battle for 5G
    • How to backup and restore a MySQL database on Windows and Linux
    • Setting up the free MySQL database server on Windows 10
    • Using the WinSCP Client on Windows to transfer files to and from a Linux server over SFTP
    • Connecting to a server via SSH with Putty
    shortcode
  • EWWW Image Optimizer – Reduce file sizes for images within WordPress including NextGEN Gallery and GRAND FlAGallery. Uses jpegtran, optipng/pngout, and gifsicle.
  • GDPR Cookie Consent – A simple way to show that your website complies with the EU Cookie Law / GDPR.
  • GTmetrix for WordPress – GTmetrix can help you develop a faster, more efficient, and all-around improved website experience for your users. Your users will love you for it.
  • TinyMCE Advanced – Enables advanced features and plugins in TinyMCE, the visual editor in WordPress.
  • Wordfence Security – Anti-virus, Firewall and Malware Scan
  • WP Meta SEO – WP Meta SEO is a plugin for WordPress to fill meta for content, images and main SEO info in a single view.
  • WP Performance Score Booster – Speed-up page load times and improve website scores in services like PageSpeed, YSlow, Pingdom and GTmetrix.
  • WP SEO HTML Sitemap – A responsive HTML sitemap that uses all of the settings for your XML sitemap in the WordPress SEO by Yoast Plugin.
  • WP-Optimize – WP-Optimize is WordPress’s #1 most installed optimisation plugin. With it, you can clean up your database easily and safely, without manual queries.
  • WP News and Scrolling Widgets Pro – WP News Pro plugin with six different types of shortcode and seven different types of widgets. Display News posts with various designs.
  • Yoast SEO – The first true all-in-one SEO solution for WordPress, including on-page content analysis, XML sitemaps and much more.
  • YouTube – YouTube Embed and YouTube Gallery WordPress Plugin. Embed a responsive video, YouTube channel, playlist gallery, or live stream

How I use these plugins to speed up my site.

  • I use EWWW Image Optimizer plugin to auto-compress my images and to provide a CDN for media asset deliver (pre-Cloudflare). Learn more about ExactDN and EWWW.io here.
  • I use Autoptimize plugin to optimise HTML/CSS/JS and ensure select assets are on my EWWW CDN. This plugin also removes WordPress Emojis, removed the use of Google Fonts, allows you to define pre-configured domains, Async Javascript-files etc.
  • I use BJ Lazy Load to prevent all images in a post from loading on load (and only as the user scrolls down the page).
  • GTmetrix for WordPress and Cloudflare plugins are for information only?
  • I use WP-Optimize to ensure my database is healthy and to disable comments/trackbacks and pingbacks.

Let’s Test UpCloud’s Disk IO in Chicago

Looks good to me, Read IO is a little bit lower than UpCloud’s Singapore data centre but still, it’s faster than Vultr.  I can’t wait for more data centres to become available around the world.

Why is UpCloud Disk IO so good?

I asked UpCloud on Twitter why the Disk IO was so good.

  • “MaxIOPS is UpCloud’s proprietary block-storage technology. MaxIOPS is physically redundant storage technology where all customer’s data is located in two separate physical devices at all times. UpCloud uses InfiniBand (!) network to connect storage backends to compute nodes, where customers’ cloud servers are running. All disks are enterprise-grade SSD’s. And using separate storage backends, it allows us to live migrate our customers’ cloud servers freely inside our infrastructure between compute nodes – whether it be due to hardware malfunction (compute node) or backend software updates (example CPU vulnerability and immediate patching).“

My Answers to Questions to support

Q1) What’s the difference between backups and snapshots (a Twitter user said Snapshots were a thing)

A1) Backups and snapshots are the same things with our infrastructure.

Q2) What are charges for backup of a 50GB drive?

A2) We charge $0.06 / GB of the disk being captured. But capture the whole disk, not just what was used. So for a 50GB drive, we charge $0.06 * 50 = $3/month. Even if 1GB were only used.

  • Support confirmed that each backup is charged (so 5 times manual backups are charged 5 times). Setting up a daily auto backup schedule for 2 weeks would create 14 billable backup charges.
  • I guess a 25GB server will be $1.50 a month

Q3) What are data charges if I go over my 2TB quota?

A3) Outgoing data charges are $0.056/GB after the pre-configured allowance.

Q4) What happens if my balance hits $0?

A4) You will get notification of low account balance 2 weeks in advance based on your current daily spend. When your balance reaches zero, your servers will be shut down. But they will still be charged for. You can automatically top-up if you want to assign a payment type from your Control Panel. You deposit into your balance when you want. We use a prepay model of payment, so you need to top up before using, not billing you after usage. We give you lots of chances to top-up.

Support Tips

  • One thing to note, when deleting servers (CPU, RAM) instances, you get the option to delete the storages separately via a pop-up window. Choose to delete permanently to delete the disk, to save credit. Any disk storage lying around even unattached to servers will be billed.
  • Charges are in USD.

I think it’s time to delete my domain from Vultr in Sydney.

Deleted my Vultr domain

I deleted my Vultr domain.

Delete Vultr Server

Done.

More Reading on UpCloud

https://www.upcloud.com/documentation/faq/

UpCloud Server Status

http://status.upcloud.com

Check out my new guide on Nixstats for awesome monitoring

What I would like

  1. Ability to name individual manual backups (tag with why I backed up).
  2. Ability to push user defined data from my VM to the dashboard
  3. Cheaper scheduled backups
  4. Sydney data centres (one day)

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Update: Post UpCloud Launch Tweaks (Awesome)

I had a look at https://www.webpagetest.org/ results to see where else I can optimise webpage delivery.

Optimisation Options

Disable dasjhicons.min.css (for unauthenticated WordPress users).

Find functions.php in the www root

Edit functions.php

Add the following

HTTP2 Push

  • Introducing HTTP/2 Server Push with NGINX 1.13.9 | NGINX
  • How To Set Up Nginx with HTTP/2 Support on Ubuntu 16.04 | DigitalOcean

I added http2 to my listening servers

I tested a http2 push page by defining this in /etc/nginx/sites-available/default 

Once I tested that push (demo here) was working I then defined two files to push that were being sent from my server

I used the WordPress Plugin Autoptimize to remove Google font usage (this removed a number of files being loaded when my page loads).

I used the WordPress Plugin WP-Optimize plugin into to remove comments and disable pingbacks and trackbacks.

WordPress wp-config.php tweaks

Add 2FA Authentication to server logins.

I recently checked out YubiCo YubiKeys and I have secured my Linux servers with 2FA prompts at login. Read the guide here. I secured my WordPress too.

Tweaks Todo

  • Compress placeholder BJ Lazy Load Image (plugin is broken)
  • Solve 2x Google Analytics tracker redirects (done, switched to Matomo)

Conclusion

I love UpCloud’s fast servers, give them a go (use my link and get $25 free credit).

I love Cloudflare for providing a fast CDN.

I love ewww.io’s automatic Image Compression and Resizing plugin that automatically handles image optimisations and pre Cloudflare/first hit CDN caching.

Read my post about server monitoring with Nixstats here.

Let the results speak for themselves (sub <1 second load times).

Results

I hope this guide helps someone.

Please consider using my referral code and get $25 credit for free.

https://www.upcloud.com/register/?promo=D84793

Ask a question or recommend an article

[contact-form-7 404 "Not Found"]

Revision History

v2.1 Newer GTMetrix scores

v2.0 New UpCloud UI Update and links to new guides.

v1.9 Spelling and grammar

v1.8 Trial mode gotcha (deposit money ASAP)

v1.7 Added RSA Private key info

v1.7 – Added new firewall rules info.

v1.6 – Added more bloat to the site, still good.

v1.5 Improving Accessibility

v1.4 Added Firewall Price

v1.3 Added wp-config and plugin usage descriptions.

v1.2 Added GTMetrix historical chart.

v1.1 Fixed free typos and added final conclusion images.

v1.0 Added final results

v0.9 added more tweaks (http2 push, removing unwanted files etc)

v0.81 Draft  – Added memory usage chart and added MaxIOPS info from UpCloud.

v0.8 Draft post.

Filed Under: CDN, Cloud, Cloudflare, Cost, CPanel, Digital Ocean, DNS, Domain, ExactDN, Firewall, Hosting, HTTPS, MySQL, MySQLGUI, NGINX, Performance, PHP, php72, Scalability, TLS, Ubuntu, UpCloud, Vultr, Wordpress Tagged With: draft, GTetrix, host, IOPS, Load Time, maxIOPS, MySQL, nginx, Page Speed Insights, Performance, php, SSD, ubuntu, UpCloud, vm

Upgrading an Ubuntu server on UpCloud to add more CPU, Memory and Disk Space

June 25, 2018 by Simon

Upgrading an Ubuntu server on UpCloud to add more CPU, Memory and Disk Space

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If you have not read my previous posts I have now moved my blog from Vultr to the awesome UpCloud host (signup using this link to get $25 free credit).

Recently I compared Digital Ocean, Vultr and UpCloud Disk IO here and UpCloud came out on top by a long way (read the blog post here). Here is my blog post on moving from Vultr to UpCloud.

Spoiler: UpCloud performance is great.

Upcloud Site Speed in GTMetrix

Why Upgrade

I have 1 CPU, 1 GB memory and 50GB storage and it is running well?  I have PHP child workers set up and have set up the preferred use of memory over swap file usage.

View of htop querying processes on Ubuntu

Before UpCloud, when I had 512MB ram on Vultr I had multiple NGINX crashed a day so I used a bash script and scheduled a cron job to clear memory cache when memory fell below 100MB (view the script here).  To further increase the speed of the WordPress I have configured the OS to use memory over the disk.  About once a day free memory falls below 100MB (this is not a problem as my script clears cached items automatically).

Graph of memory falling below 100MB every day

I’d like to add more memory as I am working on some things (watch this space) and I will use the extra memory. I’d prefer the server is set up now for the expected workload.

How to Upgrade

This is how I upgraded from 1xCPU/2GB Memory/50GB Storage/2TB Transferred Data to a 2 CPU/4GB Mmeory/80GB Storage/4TB Transferred Data server.

UpCloud Pricing: https://www.upcloud.com/pricing/

Pricing table form https://www.upcloud.com/pricing/

Upgrade an UpCloud VM

I shut down my existing VM. Read this guide to setup a VM.

shutdown -P

Login to the UpCloud dashboard, select your server (confirm the server has shut down) and click General Settings, choose the upgrade and click Update.

Upgrade the Server, shut it down the server and choose upgrade

I confirmed the upgrade options (2x CPU, 4096 MB Memory).

Confirm Upgrade Options

Click Update

Upgrade Applied

After 10 seconds you can start your server from the UpCloud server.

I confirmed the CPU upgrade was visible in the VM

cat /proc/cpuinfo
processor       : 0
vendor_id       : GenuineIntel
cpu family      : 6
model           : 63
model name      : Intel(R) Xeon(R) CPU E5-2687W v3 @ 3.10GHz
stepping        : 2
microcode       : 0x1
cpu MHz         : 3099.978
cache size      : 16384 KB
physical id     : 0
siblings        : 2
core id         : 0
cpu cores       : 2
apicid          : 0
initial apicid  : 0
fpu             : yes
fpu_exception   : yes
cpuid level     : 13
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single pti fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid xsaveopt arat
bugs            : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass
bogomips        : 6199.95
clflush size    : 64
cache_alignment : 64
address sizes   : 40 bits physical, 48 bits virtual
power management:

processor       : 1
vendor_id       : GenuineIntel
cpu family      : 6
model           : 63
model name      : Intel(R) Xeon(R) CPU E5-2687W v3 @ 3.10GHz
stepping        : 2
microcode       : 0x1
cpu MHz         : 3099.978
cache size      : 16384 KB
physical id     : 0
siblings        : 2
core id         : 1
cpu cores       : 2
apicid          : 1
initial apicid  : 1
fpu             : yes
fpu_exception   : yes
cpuid level     : 13
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single pti fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid xsaveopt arat
bugs            : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass
bogomips        : 6199.95
clflush size    : 64
cache_alignment : 64
address sizes   : 40 bits physical, 48 bits virtual
power management:

Software Tweaks Post Upgrade.

I added these settings to the top of /etc/nginx/nginx.conf to ensure the extra CPU was used.

worker_processes auto;
worker_cpu_affinity auto;

I increased PHP FPM ( /etc/php/7.2/fpm/php.ini ) to increase the memory usage and child workers. I doubled child workers and max memeory limit.

memory_limit = 3072M
pm.max_children = 80
pm.start_servers = 30
pm.min_spare_servers = 10
pm.max_spare_servers = 30

I restarted NGINX and PHP

nginx -t
nginx -s reload
/etc/init.d/nginx restart
service php7.2-fpm restart

I tweaked WordPress max memory limits

define( 'WP_MEMORY_LIMIT','3072M');
define( 'WP_MAX_MEMORY_LIMIT','3072M');

MySQL Tweaks: I logged into MySQL

mysql -u root -p

I ran “SHOW GLOBAL STATUS” to view stats

mysql> SHOW GLOBAL STATUS;
+-----------------------------------------------+--------------------------------------------------+
| Variable_name                                 | Value                                            |
+-----------------------------------------------+--------------------------------------------------+
| Aborted_clients                               | 0                                                |
| Aborted_connects                              | 0                                                |
| Binlog_cache_disk_use                         | 0                                                |
| Binlog_cache_use                              | 0                                                |
| Binlog_stmt_cache_disk_use                    | 0                                                |
| Binlog_stmt_cache_use                         | 0                                                |
| Bytes_received                                | 3179986                                          |
| Bytes_sent                                    | 223872114                                        |
| Com_admin_commands                            | 0                                                |
| Com_assign_to_keycache                        | 0                                                |
| Com_alter_db                                  | 0                                                |
| Com_alter_db_upgrade                          | 0                                                |
| Com_alter_event                               | 0                                                |
| Com_alter_function                            | 0                                                |
| Com_alter_instance                            | 0                                                |
| Com_alter_procedure                           | 0                                                |
| Com_alter_server                              | 0                                                |
| Com_alter_table                               | 0                                                |
| Com_alter_tablespace                          | 0                                                |
| Com_alter_user                                | 0                                                |
| Com_analyze                                   | 0                                                |
| Com_begin                                     | 0                                                |
| Com_binlog                                    | 0                                                |
| Com_call_procedure                            | 0                                                |
| Com_change_db                                 | 284                                              |
| Com_change_master                             | 0                                                |
| Com_change_repl_filter                        | 0                                                |
| Com_check                                     | 0                                                |
| Com_checksum                                  | 0                                                |
| Com_commit                                    | 0                                                |
| Com_create_db                                 | 0                                                |
| Com_create_event                              | 0                                                |
| Com_create_function                           | 0                                                |
| Com_create_index                              | 0                                                |
| Com_create_procedure                          | 0                                                |
| Com_create_server                             | 0                                                |
| Com_create_table                              | 0                                                |
| Com_create_trigger                            | 0                                                |
| Com_create_udf                                | 0                                                |
| Com_create_user                               | 0                                                |
| Com_create_view                               | 0                                                |
| Com_dealloc_sql                               | 0                                                |
| Com_delete                                    | 18                                               |
| Com_delete_multi                              | 0                                                |
| Com_do                                        | 0                                                |
| Com_drop_db                                   | 0                                                |
| Com_drop_event                                | 0                                                |
| Com_drop_function                             | 0                                                |
| Com_drop_index                                | 0                                                |
| Com_drop_procedure                            | 0                                                |
| Com_drop_server                               | 0                                                |
| Com_drop_table                                | 0                                                |
| Com_drop_trigger                              | 0                                                |
| Com_drop_user                                 | 0                                                |
| Com_drop_view                                 | 0                                                |
| Com_empty_query                               | 0                                                |
| Com_execute_sql                               | 0                                                |
| Com_explain_other                             | 0                                                |
| Com_flush                                     | 0                                                |
| Com_get_diagnostics                           | 0                                                |
| Com_grant                                     | 0                                                |
| Com_ha_close                                  | 0                                                |
| Com_ha_open                                   | 0                                                |
| Com_ha_read                                   | 0                                                |
| Com_help                                      | 0                                                |
| Com_insert                                    | 342                                              |
| Com_insert_select                             | 0                                                |
| Com_install_plugin                            | 0                                                |
| Com_kill                                      | 0                                                |
| Com_load                                      | 0                                                |
| Com_lock_tables                               | 0                                                |
| Com_optimize                                  | 0                                                |
| Com_preload_keys                              | 0                                                |
| Com_prepare_sql                               | 0                                                |
| Com_purge                                     | 0                                                |
| Com_purge_before_date                         | 0                                                |
| Com_release_savepoint                         | 0                                                |
| Com_rename_table                              | 0                                                |
| Com_rename_user                               | 0                                                |
| Com_repair                                    | 0                                                |
| Com_replace                                   | 0                                                |
| Com_replace_select                            | 0                                                |
| Com_reset                                     | 0                                                |
| Com_resignal                                  | 0                                                |
| Com_revoke                                    | 0                                                |
| Com_revoke_all                                | 0                                                |
| Com_rollback                                  | 0                                                |
| Com_rollback_to_savepoint                     | 0                                                |
| Com_savepoint                                 | 0                                                |
| Com_select                                    | 16358                                            |
| Com_set_option                                | 849                                              |
| Com_signal                                    | 0                                                |
| Com_show_binlog_events                        | 0                                                |
| Com_show_binlogs                              | 0                                                |
| Com_show_charsets                             | 0                                                |
| Com_show_collations                           | 0                                                |
| Com_show_create_db                            | 0                                                |
| Com_show_create_event                         | 0                                                |
| Com_show_create_func                          | 0                                                |
| Com_show_create_proc                          | 0                                                |
| Com_show_create_table                         | 0                                                |
| Com_show_create_trigger                       | 0                                                |
| Com_show_databases                            | 3                                                |
| Com_show_engine_logs                          | 0                                                |
| Com_show_engine_mutex                         | 0                                                |
| Com_show_engine_status                        | 0                                                |
| Com_show_events                               | 0                                                |
| Com_show_errors                               | 0                                                |
| Com_show_fields                               | 921                                              |
| Com_show_function_code                        | 0                                                |
| Com_show_function_status                      | 0                                                |
| Com_show_grants                               | 0                                                |
| Com_show_keys                                 | 1                                                |
| Com_show_master_status                        | 0                                                |
| Com_show_open_tables                          | 0                                                |
| Com_show_plugins                              | 0                                                |
| Com_show_privileges                           | 0                                                |
| Com_show_procedure_code                       | 0                                                |
| Com_show_procedure_status                     | 0                                                |
| Com_show_processlist                          | 0                                                |
| Com_show_profile                              | 0                                                |
| Com_show_profiles                             | 0                                                |
| Com_show_relaylog_events                      | 0                                                |
| Com_show_slave_hosts                          | 0                                                |
| Com_show_slave_status                         | 0                                                |
| Com_show_status                               | 6                                                |
| Com_show_storage_engines                      | 0                                                |
| Com_show_table_status                         | 0                                                |
| Com_show_tables                               | 2                                                |
| Com_show_triggers                             | 0                                                |
| Com_show_variables                            | 6                                                |
| Com_show_warnings                             | 1                                                |
| Com_show_create_user                          | 0                                                |
| Com_shutdown                                  | 0                                                |
| Com_slave_start                               | 0                                                |
| Com_slave_stop                                | 0                                                |
| Com_group_replication_start                   | 0                                                |
| Com_group_replication_stop                    | 0                                                |
| Com_stmt_execute                              | 4                                                |
| Com_stmt_close                                | 4                                                |
| Com_stmt_fetch                                | 0                                                |
| Com_stmt_prepare                              | 4                                                |
| Com_stmt_reset                                | 0                                                |
| Com_stmt_send_long_data                       | 4                                                |
| Com_truncate                                  | 2                                                |
| Com_uninstall_plugin                          | 0                                                |
| Com_unlock_tables                             | 0                                                |
| Com_update                                    | 70                                               |
| Com_update_multi                              | 0                                                |
| Com_xa_commit                                 | 0                                                |
| Com_xa_end                                    | 0                                                |
| Com_xa_prepare                                | 0                                                |
| Com_xa_recover                                | 0                                                |
| Com_xa_rollback                               | 0                                                |
| Com_xa_start                                  | 0                                                |
| Com_stmt_reprepare                            | 0                                                |
| Connection_errors_accept                      | 0                                                |
| Connection_errors_internal                    | 0                                                |
| Connection_errors_max_connections             | 0                                                |
| Connection_errors_peer_address                | 0                                                |
| Connection_errors_select                      | 0                                                |
| Connection_errors_tcpwrap                     | 0                                                |
| Connections                                   | 292                                              |
| Created_tmp_disk_tables                       | 1124                                             |
| Created_tmp_files                             | 30                                               |
| Created_tmp_tables                            | 1369                                             |
| Delayed_errors                                | 0                                                |
| Delayed_insert_threads                        | 0                                                |
| Delayed_writes                                | 0                                                |
| Flush_commands                                | 1                                                |
| Handler_commit                                | 6094                                             |
| Handler_delete                                | 33                                               |
| Handler_discover                              | 0                                                |
| Handler_external_lock                         | 38571                                            |
| Handler_mrr_init                              | 0                                                |
| Handler_prepare                               | 0                                                |
| Handler_read_first                            | 2299                                             |
| Handler_read_key                              | 134761                                           |
| Handler_read_last                             | 237                                              |
| Handler_read_next                             | 310119                                           |
| Handler_read_prev                             | 2733                                             |
| Handler_read_rnd                              | 222350                                           |
| Handler_read_rnd_next                         | 472820                                           |
| Handler_rollback                              | 0                                                |
| Handler_savepoint                             | 0                                                |
| Handler_savepoint_rollback                    | 0                                                |
| Handler_update                                | 15605                                            |
| Handler_write                                 | 17310                                            |
| Innodb_buffer_pool_dump_status                | Dumping of buffer pool not started               |
| Innodb_buffer_pool_load_status                | Buffer pool(s) load completed at 180624 23:38:01 |
| Innodb_buffer_pool_resize_status              |                                                  |
| Innodb_buffer_pool_pages_data                 | 1035                                             |
| Innodb_buffer_pool_bytes_data                 | 16957440                                         |
| Innodb_buffer_pool_pages_dirty                | 0                                                |
| Innodb_buffer_pool_bytes_dirty                | 0                                                |
| Innodb_buffer_pool_pages_flushed              | 1936                                             |
| Innodb_buffer_pool_pages_free                 | 7144                                             |
| Innodb_buffer_pool_pages_misc                 | 13                                               |
| Innodb_buffer_pool_pages_total                | 8192                                             |
| Innodb_buffer_pool_read_ahead_rnd             | 0                                                |
| Innodb_buffer_pool_read_ahead                 | 0                                                |
| Innodb_buffer_pool_read_ahead_evicted         | 0                                                |
| Innodb_buffer_pool_read_requests              | 306665                                           |
| Innodb_buffer_pool_reads                      | 950                                              |
| Innodb_buffer_pool_wait_free                  | 0                                                |
| Innodb_buffer_pool_write_requests             | 26509                                            |
| Innodb_data_fsyncs                            | 1229                                             |
| Innodb_data_pending_fsyncs                    | 0                                                |
| Innodb_data_pending_reads                     | 0                                                |
| Innodb_data_pending_writes                    | 0                                                |
| Innodb_data_read                              | 16273920                                         |
| Innodb_data_reads                             | 1078                                             |
| Innodb_data_writes                            | 2857                                             |
| Innodb_data_written                           | 53379584                                         |
| Innodb_dblwr_pages_written                    | 1275                                             |
| Innodb_dblwr_writes                           | 109                                              |
| Innodb_log_waits                              | 0                                                |
| Innodb_log_write_requests                     | 450                                              |
| Innodb_log_writes                             | 585                                              |
| Innodb_os_log_fsyncs                          | 793                                              |
| Innodb_os_log_pending_fsyncs                  | 0                                                |
| Innodb_os_log_pending_writes                  | 0                                                |
| Innodb_os_log_written                         | 664064                                           |
| Innodb_page_size                              | 16384                                            |
| Innodb_pages_created                          | 56                                               |
| Innodb_pages_read                             | 988                                              |
| Innodb_pages_written                          | 1936                                             |
| Innodb_row_lock_current_waits                 | 0                                                |
| Innodb_row_lock_time                          | 0                                                |
| Innodb_row_lock_time_avg                      | 0                                                |
| Innodb_row_lock_time_max                      | 0                                                |
| Innodb_row_lock_waits                         | 0                                                |
| Innodb_rows_deleted                           | 2                                                |
| Innodb_rows_inserted                          | 19219                                            |
| Innodb_rows_read                              | 249102                                           |
| Innodb_rows_updated                           | 77                                               |
| Innodb_num_open_files                         | 81                                               |
| Innodb_truncated_status_writes                | 0                                                |
| Innodb_available_undo_logs                    | 128                                              |
| Key_blocks_not_flushed                        | 0                                                |
| Key_blocks_unused                             | 12751                                            |
| Key_blocks_used                               | 645                                              |
| Key_read_requests                             | 321877                                           |
| Key_reads                                     | 648                                              |
| Key_write_requests                            | 196                                              |
| Key_writes                                    | 150                                              |
| Locked_connects                               | 0                                                |
| Max_execution_time_exceeded                   | 0                                                |
| Max_execution_time_set                        | 0                                                |
| Max_execution_time_set_failed                 | 0                                                |
| Max_used_connections                          | 3                                                |
| Max_used_connections_time                     | 2018-06-24 23:43:48                              |
| Not_flushed_delayed_rows                      | 0                                                |
| Ongoing_anonymous_transaction_count           | 0                                                |
| Open_files                                    | 229                                              |
| Open_streams                                  | 0                                                |
| Open_table_definitions                        | 206                                              |
| Open_tables                                   | 786                                              |
| Opened_files                                  | 502                                              |
| Opened_table_definitions                      | 208                                              |
| Opened_tables                                 | 817                                              |
| Performance_schema_accounts_lost              | 0                                                |
| Performance_schema_cond_classes_lost          | 0                                                |
| Performance_schema_cond_instances_lost        | 0                                                |
| Performance_schema_digest_lost                | 0                                                |
| Performance_schema_file_classes_lost          | 0                                                |
| Performance_schema_file_handles_lost          | 0                                                |
| Performance_schema_file_instances_lost        | 0                                                |
| Performance_schema_hosts_lost                 | 0                                                |
| Performance_schema_index_stat_lost            | 0                                                |
| Performance_schema_locker_lost                | 0                                                |
| Performance_schema_memory_classes_lost        | 0                                                |
| Performance_schema_metadata_lock_lost         | 0                                                |
| Performance_schema_mutex_classes_lost         | 0                                                |
| Performance_schema_mutex_instances_lost       | 0                                                |
| Performance_schema_nested_statement_lost      | 0                                                |
| Performance_schema_prepared_statements_lost   | 0                                                |
| Performance_schema_program_lost               | 0                                                |
| Performance_schema_rwlock_classes_lost        | 0                                                |
| Performance_schema_rwlock_instances_lost      | 0                                                |
| Performance_schema_session_connect_attrs_lost | 0                                                |
| Performance_schema_socket_classes_lost        | 0                                                |
| Performance_schema_socket_instances_lost      | 0                                                |
| Performance_schema_stage_classes_lost         | 0                                                |
| Performance_schema_statement_classes_lost     | 0                                                |
| Performance_schema_table_handles_lost         | 0                                                |
| Performance_schema_table_instances_lost       | 0                                                |
| Performance_schema_table_lock_stat_lost       | 0                                                |
| Performance_schema_thread_classes_lost        | 0                                                |
| Performance_schema_thread_instances_lost      | 0                                                |
| Performance_schema_users_lost                 | 0                                                |
| Prepared_stmt_count                           | 0                                                |
| Qcache_free_blocks                            | 1                                                |
| Qcache_free_memory                            | 16760152                                         |
| Qcache_hits                                   | 0                                                |
| Qcache_inserts                                | 0                                                |
| Qcache_lowmem_prunes                          | 0                                                |
| Qcache_not_cached                             | 16355                                            |
| Qcache_queries_in_cache                       | 0                                                |
| Qcache_total_blocks                           | 1                                                |
| Queries                                       | 19164                                            |
| Questions                                     | 19155                                            |
| Select_full_join                              | 0                                                |
| Select_full_range_join                        | 0                                                |
| Select_range                                  | 2677                                             |
| Select_range_check                            | 0                                                |
| Select_scan                                   | 2098                                             |
| Slave_open_temp_tables                        | 0                                                |
| Slow_launch_threads                           | 0                                                |
| Slow_queries                                  | 0                                                |
| Sort_merge_passes                             | 12                                               |
| Sort_range                                    | 4859                                             |
| Sort_rows                                     | 244452                                           |
| Sort_scan                                     | 854                                              |
| Ssl_accept_renegotiates                       | 0                                                |
| Ssl_accepts                                   | 0                                                |
| Ssl_callback_cache_hits                       | 0                                                |
| Ssl_cipher                                    |                                                  |
| Ssl_cipher_list                               |                                                  |
| Ssl_client_connects                           | 0                                                |
| Ssl_connect_renegotiates                      | 0                                                |
| Ssl_ctx_verify_depth                          | 0                                                |
| Ssl_ctx_verify_mode                           | 0                                                |
| Ssl_default_timeout                           | 0                                                |
| Ssl_finished_accepts                          | 0                                                |
| Ssl_finished_connects                         | 0                                                |
| Ssl_server_not_after                          |                                                  |
| Ssl_server_not_before                         |                                                  |
| Ssl_session_cache_hits                        | 0                                                |
| Ssl_session_cache_misses                      | 0                                                |
| Ssl_session_cache_mode                        | NONE                                             |
| Ssl_session_cache_overflows                   | 0                                                |
| Ssl_session_cache_size                        | 0                                                |
| Ssl_session_cache_timeouts                    | 0                                                |
| Ssl_sessions_reused                           | 0                                                |
| Ssl_used_session_cache_entries                | 0                                                |
| Ssl_verify_depth                              | 0                                                |
| Ssl_verify_mode                               | 0                                                |
| Ssl_version                                   |                                                  |
| Table_locks_immediate                         | 11962                                            |
| Table_locks_waited                            | 0                                                |
| Table_open_cache_hits                         | 19395                                            |
| Table_open_cache_misses                       | 817                                              |
| Table_open_cache_overflows                    | 12                                               |
| Tc_log_max_pages_used                         | 0                                                |
| Tc_log_page_size                              | 0                                                |
| Tc_log_page_waits                             | 0                                                |
| Threads_cached                                | 2                                                |
| Threads_connected                             | 1                                                |
| Threads_created                               | 3                                                |
| Threads_running                               | 1                                                |
| Uptime                                        | 2944                                             |
| Uptime_since_flush_status                     | 2944                                             |
+-----------------------------------------------+--------------------------------------------------+
353 rows in set (0.00 sec)

Read more on SHOW GLOBAL STATUS here. Read more on the values here.

I can see NO major errors here (possibly due to UpClouds awesome disk IO) so I won’t be making memory tweaks in MySQL. Sign Up using this link and get $25 credit free on UpCloud and see for yourself how fast they are.

Configure Ubuntu System Memory Usage

Edit /etc/sysctl.conf

Add the following to allow things to sit in ram longer

vm.vfs_cache_pressure=50

Snip from: https://www.kernel.org/doc/Documentation/sysctl/vm.txt

This percentage value controls the tendency of the kernel to reclaim the memory which is used for caching of directory and inode objects.

At the default value of vfs_cache_pressure=100 the kernel will attempt to reclaim dentries and inodes at a "fair" rate with respect to pagecache and swapcache reclaim.  Decreasing vfs_cache_pressure causes the kernel to prefer to retain dentry and inode caches. When vfs_cache_pressure=0, the kernel will never reclaim dentries and inodes due to memory pressure and this can easily lead to out-of-memory conditions. Increasing vfs_cache_pressure beyond 100 causes the kernel to prefer to reclaim dentries and inodes.

Increasing vfs_cache_pressure significantly beyond 100 may have negative performance impact. Reclaim code needs to take various locks to find freeable directory and inode objects. With vfs_cache_pressure=1000, it will look for ten times more freeable objects than there are."

Read these pages here and here regarding setting MySQL memory.

Reboot

shutdown -r now

Resize the disk

The 2x CPU, 4GB memory plan comes with 80GB storage allowance.  My disk at present is 50GB and I will update the size soon following this guide soon.

Upgrade disk from 50gb to 80GB soon

Quick Benchmark

I used loader.io to load 500 users to access my site in 1 minute.

HTOP showing 2x busy CPU's running at 60%

The benchmark worked with no errors.

Loader.io Success with 500 concurrent users

This benchmark was performed with no Cloudflare caching. I should get Cloudflare caching working again to lower the average response time. I loaded my website manually in Google Chrome while loader.io threw 500 users at my site and it loaded very fast.

Conclusion

After a few days, I checked my memory logs and there were no low memory triggers (just normal internal memory management triggers). Ubuntu was happier.

No Low memory low triggers

This graph was taken before I set “vm.vfs_cache_pressure” so I will update this graph in a few days.

I hope this guide helps someone.

Please consider using my referral code and get $25 credit for free.

https://www.upcloud.com/register/?promo=D84793

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Revision History

1.0 Initial Post

Filed Under: Backup, Cloud, DB, Domain, GUI, NGINX, Performance, PHP, Scalability, Server, Ubuntu, UpCloud, Upgrade VM Tagged With: add, an, and, cpu, Disk, memory, more, on, server, Space, to, ubuntu, UpCloud, Upgrading

Measuring VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 4 of 4

June 5, 2018 by Simon

How can you measure VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 4 of 4

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Read Part 1, Part 2, Part 3 or Part 4

I ran the MySQL benchmark preparation command again (no problem this time).

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=###################### prepare
sysbench 0.4.12:  multi-threaded system evaluation benchmark

Creating table 'sbtest'...
Creating 1000000 records in table 'sbtest'...

Test table and records created

Test Records Created

Now I can benchmark MySQL on my main server.

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=################################# --max-time=60 --oltp-read-only=on --max-requests=0 --num-threads=8 run

RAW Output

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 8

Doing OLTP test.
Running mixed OLTP test
Doing read-only test
Using Special distribution (12 iterations,  1 pct of values are returned in 75 pct cases)
Using "BEGIN" for starting transactions
Using auto_inc on the id column
Threads started!
Time limit exceeded, exiting...
(last message repeated 7 times)
Done.

OLTP test statistics:
    queries performed:
        read:                            336210
        write:                           0
        other:                           48030
        total:                           384240
    transactions:                        24015  (400.09 per sec.)
    deadlocks:                           0      (0.00 per sec.)
    read/write requests:                 336210 (5601.24 per sec.)
    other operations:                    48030  (800.18 per sec.)

Test execution summary:
    total time:                          60.0242s
    total number of events:              24015
    total time taken by event execution: 480.0242
    per-request statistics:
         min:                                  1.79ms
         avg:                                 19.99ms
         max:                                141.00ms
         approx.  95 percentile:              37.49ms

Threads fairness:
    events (avg/stddev):           3001.8750/27.36
    execution time (avg/stddev):   60.0030/0.01

Results

queries performed (in 60 seconds):

  • read: 336210
  • other: 48030
  • total: 384240

I decided to add an index to see if I can speed this query up (read the MySQL index page here). I added an index (in Adminer) on the columns “Id” and “pad” for the sbtest table in the test database

I restarted the MySQL process

mysql restart
[ ok ] Restarting mysql (via systemctl): mysql.service.

I ran the same benchmark again.

Raw Output

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=########################## --max-time=60 --oltp-read-only=on --max-requests=0 --num-threads=8 run
sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 8

Doing OLTP test.
Running mixed OLTP test
Doing read-only test
Using Special distribution (12 iterations,  1 pct of values are returned in 75 pct cases)
Using "BEGIN" for starting transactions
Using auto_inc on the id column
Threads started!
Time limit exceeded, exiting...
(last message repeated 7 times)
Done.

OLTP test statistics:
    queries performed:
        read:                            426538
        write:                           0
        other:                           60934
        total:                           487472
    transactions:                        30467  (507.69 per sec.)
    deadlocks:                           0      (0.00 per sec.)
    read/write requests:                 426538 (7107.67 per sec.)
    other operations:                    60934  (1015.38 per sec.)

Test execution summary:
    total time:                          60.0110s
    total number of events:              30467
    total time taken by event execution: 479.9124
    per-request statistics:
         min:                                  5.75ms
         avg:                                 15.75ms
         max:                                138.57ms
         approx.  95 percentile:              25.10ms

Threads fairness:
    events (avg/stddev):           3808.3750/8.70
    execution time (avg/stddev):   59.9891/0.00

Results

The quick index added 20% extra throughput on queries 🙂

Mysql before and after an index

Don’t forget to delete your test database

DROP DATABASE `test`;

Viewing MySQL Index Usage (on the “test” database)

Query to show Index stats for a table ‘test’

SELECT
 OBJECT_SCHEMA as 'Database', OBJECT_NAME as 'Table', 
 INDEX_NAME as 'Index', 
 COUNT_STAR, 
 SUM_TIMER_WAIT,  MIN_TIMER_WAIT, AVG_TIMER_WAIT, MAX_TIMER_WAIT, 
 COUNT_READ, 
 SUM_TIMER_READ, MIN_TIMER_READ, AVG_TIMER_READ, MAX_TIMER_READ,  
 COUNT_FETCH, SUM_TIMER_FETCH, MIN_TIMER_FETCH, AVG_TIMER_FETCH, MAX_TIMER_FETCH
FROM 
 performance_schema.table_io_waits_summary_by_index_usage
WHERE 
 object_schema = 'test'

I can see the MySQL PRIMARY index is getting used 🙂

Index Summary

Read more in viewable query stats (columns) here.

Other System Information Tools

Show processor information

cat /proc/cpuinfo

Output

processor       : 0
vendor_id       : GenuineIntel
cpu family      : 6
model           : 61
model name      : Virtual CPU a7769a6388d5
stepping        : 2
microcode       : 0x1
cpu MHz         : 2394.454
cache size      : 16384 KB
physical id     : 0
siblings        : 1
core id         : 0
cpu cores       : 1
apicid          : 0
initial apicid  : 0
fpu             : yes
fpu_exception   : yes
cpuid level     : 13
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 syscall nx rdtscp lm constant_tsc rep_good nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single kaiser fsgsbase bmi1 avx2 smep bmi2 erms invpcid xsaveopt arat
bugs            : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass
bogomips        : 4788.90
clflush size    : 64
cache_alignment : 64
address sizes   : 40 bits physical, 48 bits virtual
power management:

Memory Information

You can assign 512MB, 1GB, 2GB or more memory to a server on Vultr, Read my guide here on upgrading resources for Vultr VM’s here.

Only upgrade your server’s memory when server processes demand it, there is no need to pay for extra idle memory. Read my older guides on upgrading Digital Ocean and AWS servers.

I use the htop utility to monitor memory and processes. The memory usage will depend on how you have configured your server to use connection pools in code, MySQL or services.  Also what memory demands do you get in pean bandwidth times?

HTOP

You can check your server memory details on Ubuntu with this command

cat /proc/meminfo

Output

MemTotal:        2048104 kB
MemFree:           96176 kB
MemAvailable:     693072 kB
Buffers:          183476 kB
Cached:           526124 kB
SwapCached:            0 kB
Active:          1467220 kB
Inactive:         243228 kB
Active(anon):    1070464 kB
Inactive(anon):    27004 kB
Active(file):     396756 kB
Inactive(file):   216224 kB
Unevictable:        3652 kB
Mlocked:            3652 kB
SwapTotal:             0 kB
SwapFree:              0 kB
Dirty:                64 kB
Writeback:             0 kB
AnonPages:       1004504 kB
Mapped:           114664 kB
Shmem:             94192 kB
Slab:             192692 kB
SReclaimable:     171892 kB
SUnreclaim:        20800 kB
KernelStack:        3072 kB
PageTables:        20528 kB
NFS_Unstable:          0 kB
Bounce:                0 kB
WritebackTmp:          0 kB
CommitLimit:     1024052 kB
Committed_AS:    2424332 kB
VmallocTotal:   34359738367 kB
VmallocUsed:           0 kB
VmallocChunk:          0 kB
HardwareCorrupted:     0 kB
AnonHugePages:    247808 kB
CmaTotal:              0 kB
CmaFree:               0 kB
HugePages_Total:       0
HugePages_Free:        0
HugePages_Rsvd:        0
HugePages_Surp:        0
Hugepagesize:       2048 kB
DirectMap4k:       67440 kB
DirectMap2M:     2029568 kB

Use Memory or Disk (Swap)

You can configure the use of Memory over Disk by configuring your/etc/sysctl.conf file (setting value “vm.swappiness”)

You can check your swap file settings by running the following command

cat /proc/sys/vm/swappiness
1

Or By running

sysctl vm.swappiness
vm.swappiness = 1

Set a new swap file value by editing /etc/sysctl.conf

sudo nano /etc/sysctl.conf

Set the following to use more ram over the swap disk.

vm.swappiness = 1

Read about swappiness values here: https://en.wikipedia.org/wiki/Swappiness

Service Performance

Performance (and allocated resources) depends on the demands of your operating system and installed software

What operating system do you have?

lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 16.04.4 LTS
Release:        16.04
Codename:       xenial

View NGINX Status, how much memory does it use?

/etc/init.d/nginx status
● nginx.service - A high performance web server and a reverse proxy server
   Loaded: loaded (/lib/systemd/system/nginx.service; enabled; vendor preset: enabled)
   Active: active (running) since Fri 2018-05-25 21:28:25 AEST; 1 weeks 3 days ago
     Docs: man:nginx(8)
 Main PID: #### (nginx)
    Tasks: 3
   Memory: 58.9M
      CPU: 33min 11.515s
   CGroup: /system.slice/nginx.service
           ├─#### nginx: master process /usr/sbin/nginx -g daemon on; master_process on;
           ├─#### nginx: worker process
           └─#### nginx: cache manager process

PHP (and Child Worker) status how much memory does it use and how many child workers do you have? Read my add PHP child workers post here (and update to PHP 7.2 here)

sudo service php7.2-fpm status
● php7.2-fpm.service - The PHP 7.2 FastCGI Process Manager
   Loaded: loaded (/lib/systemd/system/php7.2-fpm.service; enabled; vendor preset: enabled)
   Active: active (running) since Fri 2018-05-25 21:28:26 AEST; 1 weeks 3 days ago
     Docs: man:php-fpm7.2(8)
 Main PID: #### (php-fpm7.2)
   Status: "Processes active: 0, idle: 20, Requests: 75911, slow: 0, Traffic: 0.1req/sec"
    Tasks: 21
   Memory: 694.2M
      CPU: 20h 49min 45.132s
   CGroup: /system.slice/php7.2-fpm.service
           ├─ #### php-fpm: master process (/etc/php/7.2/fpm/php-fpm.conf)
           ├─ #### php-fpm: pool www-acc
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-acc
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           └─ #### php-fpm: pool www-usr

MySQL Status

sudo service mysql status
● mysql.service - MySQL Community Server
   Loaded: loaded (/lib/systemd/system/mysql.service; enabled; vendor preset: enabled)
   Active: active (running) since Fri 2018-05-25 21:28:27 AEST; 1 weeks 3 days ago
 Main PID: ##### (mysqld)
    Tasks: 35
   Memory: 405.9M
      CPU: 2h 17min 31.822s
   CGroup: /system.slice/mysql.service
           └─#### /usr/sbin/mysqld

Shared VM Hosts

One of the biggest impacts (after server latency) for your server is not the disk performance but the number of hosts/websites on the server who are also using the disk and server resources.

Reverse IP Lookup

I have 80 other web servers on my server (based on a reverse lookup).

I may move to a dedicated box when I can afford it.

Security

Above all else ensure that security is number 1 priority and make performance second priority.

Scan your site with Zap, Qualys and Kali Linux. Performance means nothing if you are hacked.

website-report

Simulated concurrent users

You can use Siege to test the maximum concurrent users accessing your site before the server starts to drop connections.

FYI: If you use Cloudflare (you should) this may not work as it will block connections.

Install Siege

sudo apt-get install siege

Test  your server with 10 concurrent serves for 1 minute

siege -t1m c10 'https://yourserver.com/'

Results

siege -t1m c10 'https://yourserver.com/'
** SIEGE 3.0.8
** Preparing 15 concurrent users for battle.
The server is now under siege...
Lifting the server siege...      done.

Transactions:                    417 hits
Availability:                 100.00 %
Elapsed time:                  59.01 secs
Data transferred:               8.24 MB
Response time:                  1.62 secs
Transaction rate:               7.07 trans/sec
Throughput:                     0.14 MB/sec
Concurrency:                   11.46
Successful transactions:         417
Failed transactions:               0
Longest transaction:            2.26
Shortest transaction:           1.49

Keep upping the connections (from 10 above) to a limit where connections start dropping.

I tried 25 then 50 concurrent users hitting a server on Digital Ocean and it did not fail.

Conclusion

  • Choose a server near your customers
  • Change hosts if one is faster and cheaper
  • Measure or benchmark your server (and compare over time).
  • Use Cloudflare

Create your own server today

  • Create your own server on Vultr here.
  • Create your own server on Digital Ocean here.
  • Create your own server on UpCloud here.

And remember you can install the Runcloud server management dashboard here.

I hope this guide helps someone.

 

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Filed Under: Cloud, Digital Ocean, disk, Domain, Linux, NGINX, Performance, PHP, php72, Scalability, Scalable, Speed, Storage, Ubuntu, UpCloud, Vultr, Wordpress Tagged With: and, can, comparing, Concurrent Users etc, cpu, digital ocean, Disk, How, Latency, measure, on, Performance, ubuntu, UpCloud - Part 4 of 4, vm, vultr, you

Measuring VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 3 of 4

June 5, 2018 by Simon

How can you measure VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 3 of 4

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I used these commands to generate bonnie++ reports from the data in part 2

echo "<h1>Bonnie Results</h1>" > /www-data/bonnie.html
echo "<h2>Vultr (Sydney)</h2>" >> /www-data/bonnie.html
echo "1.97,1.97,servername,1,1528177870,4G,,656,99,308954,68,113706,33,1200,92,188671,30,10237,251,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,26067us,119ms,179ms,29139us,26069us,16118us,1463us,703us,880us,263us,119us,593us" | bon_csv2html >> /www-data/bonnie.html
echo "<h2>Digital Ocean (London)</h2>" >> /www-data/bonnie.html
echo "1.97,1.97,servername,1,1528186398,4G,,699,99,778636,74,610414,60,1556,99,1405337,59,+++++,+++,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,17678us,10099us,17014us,7027us,3067us,2366us,1243us,376us,611us,108us,59us,181us" | bon_csv2html >> /www-data/bonnie.html
echo "<h2>UpCloud (Singapore)</h2>" >> /www-data/bonnie.html
echo "1.97,1.97,servername,1,1528226703,4G,,1014,99,407179,24,366622,32,2137,99,451886,17,+++++,+++,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,11297us,54232us,16443us,4949us,44883us,1595us,264us,340us,561us,138us,66us,327us" | bon_csv2html >> /www-data/bonnie.html

Image of results here

Bonnie Results

Network Performace

IMHO Network Latency is the biggest impact on server performance, Read my old post on scalability on a budget here. I am in Australia an having a server in Singapore was too far away and latency was terrible.

Here is a non-scientific example of pinging a Vultr, Digital Ocean and UpCloud server in three different locations (and Google).

Ping Test

Test Ping Results

  • Vultr 132ms Ping Average (Sydney)
  • Digital Ocean 322ms Ping Average (London)
  • UpCloud 180ms Ping Average (Singapore)

Latency matters, run a https://www.webpagetest.org/ scan over your site to see why.

Adding https added almost 0.7 seconds to https communications in the past on Digital Ocean (a few thousand kilometres away). The longer the latency the longer HTTPS handshakes take.

SSL

Deploying a server to Singapore (in my experience) is bad if your visitors are in Australia. But deploying to other regions may be lower in cost though. It’s a trade off.

Server Location

Deploy servers as close as you can to your customers is the best tip for performance.

Deploy serves close to your customers

Also, consider setting up Image Optimization and Image CDN plugins (guide here) in WordPress and using Cloudflare (guide here)

Benchmarking with SysBench

Install CPU Benchmark

sudo apt-get install sysbench

CPU Benchmark (Vultr/Sydney)

Result

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1

Doing CPU performance benchmark

Threads started!
Done.

Maximum prime number checked in CPU test: 20000


Test execution summary:
    total time:                          39.1700s
    total number of events:              10000
    total time taken by event execution: 39.1586
    per-request statistics:
         min:                                  2.90ms
         avg:                                  3.92ms
         max:                                 20.44ms
         approx.  95 percentile:               7.43ms

Threads fairness:
    events (avg/stddev):           10000.0000/0.00
    execution time (avg/stddev):   39.1586/0.00

39.15 seconds

CPU Benchmark (Digital Ocean/London)

sysbench --test=cpu --cpu-max-prime=20000 run

Result

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1

Doing CPU performance benchmark

Threads started!
Done.

Maximum prime number checked in CPU test: 20000


Test execution summary:
    total time:                          33.4382s
    total number of events:              10000
    total time taken by event execution: 33.4352
    per-request statistics:
         min:                                  3.24ms
         avg:                                  3.34ms
         max:                                  6.45ms
         approx.  95 percentile:               3.45ms

Threads fairness:
    events (avg/stddev):           10000.0000/0.00
    execution time (avg/stddev):   33.4352/0.00

33.43 sec

CPU Benchmark (UpCloud/Singapore)

sysbench --test=cpu --cpu-max-prime=20000 run

Result

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1



Doing CPU performance benchmark

Threads started!
Done.

Maximum prime number checked in CPU test: 20000


Test execution summary:
    total time:                          23.7809s
    total number of events:              10000
    total time taken by event execution: 23.7780
    per-request statistics:
         min:                                  2.35ms
         avg:                                  2.38ms
         max:                                  6.92ms
         approx.  95 percentile:               2.46ms

Threads fairness:
    events (avg/stddev):           10000.0000/0.00
    execution time (avg/stddev):   23.7780/0.00

23.77 sec

Surprisingly, 1st place in prime generation goes to UpCloud, then Digital Ocean then Vultr.  UpCloud has some good processors.

Processors:

  • UpCLoud (Singapore): Intel(R) Xeon(R) CPU E5-2687W v4 @ 3.00GHz
  • Digital Ocean (London): Intel(R) Xeon(R) CPU E5-2630L v2 @ 2.40GHz
  • Vultr (Sydney): Virtual CPU a7769a6388d5 (Masked/Hidden CPU @ 2.40GHz)

(Lower is better)

prime benchmark results

(oops, typo in the chart should say Vultr)

Benchmark the file IO

Confirm free space

df -h /

Install Sysbench

sudo apt-get install sysbench

I had 10GB free on all servers (Vultr, Digitial Ocean and UpCloud) so I created a 10GB test file.

sysbench --test=fileio --file-total-size=10G prepare
sysbench 0.4.12:  multi-threaded system evaluation benchmark

128 files, 81920Kb each, 10240Mb total
Creating files for the test...

Now I can run the benchmark and use the pre-created text file.

sysbench --test=fileio --file-total-size=10G --file-test-mode=rndrw --init-rng=on --max-time=300 --max-requests=0 run

SysBench description from the Ubuntu manpage.

“SysBench is a modular, cross-platform and multi-threaded benchmark tool for evaluating OS parameters that are important for a system running a database under intensive load. The idea of this benchmark suite is to quickly get an impression about system performance without setting up complex database benchmarks or even without installing a database at all.”

SysBench Results (Vultr/Sydney)

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1
Initializing random number generator from timer.


Extra file open flags: 0
128 files, 80Mb each
10Gb total file size
Block size 16Kb
Number of random requests for random IO: 0
Read/Write ratio for combined random IO test: 1.50
Periodic FSYNC enabled, calling fsync() each 100 requests.
Calling fsync() at the end of test, Enabled.
Using synchronous I/O mode
Doing random r/w test
Threads started!
Time limit exceeded, exiting...
Done.

Operations performed:  385920 Read, 257280 Write, 823266 Other = 1466466 Total
Read 5.8887Gb  Written 3.9258Gb  Total transferred 9.8145Gb  (33.5Mb/sec)
 2143.98 Requests/sec executed

Test execution summary:
    total time:                          300.0026s
    total number of events:              643200
    total time taken by event execution: 182.4249
    per-request statistics:
         min:                                  0.01ms
         avg:                                  0.28ms
         max:                                 18.12ms
         approx.  95 percentile:               0.55ms

Threads fairness:
    events (avg/stddev):           643200.0000/0.00
    execution time (avg/stddev):   182.4249/0.00

SysBench Results (Digital Ocean/London)

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1
Initializing random number generator from timer.


Extra file open flags: 0
128 files, 80Mb each
10Gb total file size
Block size 16Kb
Number of random requests for random IO: 0
Read/Write ratio for combined random IO test: 1.50
Periodic FSYNC enabled, calling fsync() each 100 requests.
Calling fsync() at the end of test, Enabled.
Using synchronous I/O mode
Doing random r/w test
Threads started!
Time limit exceeded, exiting...
Done.

Operations performed:  944280 Read, 629520 Write, 2014432 Other = 3588232 Total
Read 14.409Gb  Written 9.6057Gb  Total transferred 24.014Gb  (81.968Mb/sec)
 5245.96 Requests/sec executed

Test execution summary:
    total time:                          300.0024s
    total number of events:              1573800
    total time taken by event execution: 160.5558
    per-request statistics:
         min:                                  0.00ms
         avg:                                  0.10ms
         max:                                 18.62ms
         approx.  95 percentile:               0.34ms

Threads fairness:
    events (avg/stddev):           1573800.0000/0.00
    execution time (avg/stddev):   160.5558/0.00

SysBench Results (UpCloud/Singapore)

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1
Initializing random number generator from timer.


Extra file open flags: 0
128 files, 80Mb each
10Gb total file size
Block size 16Kb
Number of random requests for random IO: 0
Read/Write ratio for combined random IO test: 1.50
Periodic FSYNC enabled, calling fsync() each 100 requests.
Calling fsync() at the end of test, Enabled.
Using synchronous I/O mode
Doing random r/w test
Threads started!
Time limit exceeded, exiting...
Done.

Operations performed:  994320 Read, 662880 Write, 2121090 Other = 3778290 Total
Read 15.172Gb  Written 10.115Gb  Total transferred 25.287Gb  (86.312Mb/sec)
 5523.97 Requests/sec executed

Test execution summary:
    total time:                          300.0016s
    total number of events:              1657200
    total time taken by event execution: 107.4434
    per-request statistics:
         min:                                  0.00ms
         avg:                                  0.06ms
         max:                                 15.43ms
         approx.  95 percentile:               0.13ms

Threads fairness:
    events (avg/stddev):           1657200.0000/0.00
    execution time (avg/stddev):   107.4434/0.00

Comparison

Sysbench Results table

sysbench fileio results (text)

Read

  • Vultr (Sydney): 385,920
  • Digital Ocean (London): 944,280
  • UpCloud (Singapore): 944,320

Write

  • Vultr (Sydney): 823,266
  • Digital Ocean (London): 629,520
  • UpCloud (Singapore): 662,880

Other

  • Vultr (Sydney): 1,466,466
  • Digital Ocean (London): 3,588,232
  • UpCloud (Singapore): 2,121,090

Total Read Gb

  • Vultr (Sydney): 5.8887 Gb
  • Digital Ocean (London): 14.409 Gb
  • UpCloud (Singapore): 15.172 Gb

Total Written Gb

  • Vultr (Sydney): 3.9258 Gb
  • Digital Ocean (London): 9.6057 Gb
  • UpCloud (Singapore): 10.115 Gb

Total Transferred Gb

  • Vultr (Sydney): 9.8145 Gb
  • Digital Ocean (London): 24.014 Gb
  • UpCloud (Singapore): 25.287 Gb

Now I can remove test file io benchmark file

sysbench --test=fileio --file-total-size=2=10G cleanup
sysbench 0.4.12:  multi-threaded system evaluation benchmark

Removing test files...

Confirm the test file has been deleted

df -h /
Filesystem      Size  Used Avail Use% Mounted on
/dev/vda1        40G   16G   23G  41% /

Bonus: Benchmark MySQL (on my main server (Vultr) not on Digital Ocean and UpCLoud)

I tried to run a command

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=#################################### prepare
sysbench 0.4.12:  multi-threaded system evaluation benchmark

FATAL: unable to connect to MySQL server, aborting...
FATAL: error 1049: Unknown database 'test'
FATAL: failed to connect to database server!

To fix the error I created a test table with Adminer (guide here).

Create Test Table

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Filed Under: CDN, Cloud, Cloudflare, Digital Ocean, disk, ExactDN, Hosting, Performance, PHP, php72, Scalability, Scalable, Server, Speed, Storage, Ubuntu, UI, UpCloud, VM, Vultr Tagged With: and, can, comparing, Concurrent, cpu, digital ocean, Disk, etc, How, Latency, measure, on, Performance, ubuntu, UpCloud - Part 3 of 4, Users, vm, vultr, you

Measuring VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 2 of 4

June 5, 2018 by Simon

How can you measure VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 2 of 4

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Measure Disk Performance with Bonnie++

Installing Bonnie++ on Ubuntu

apt-get install bonnie++

Read this. post on using Bonnie++

Benchmark disk IO with DD and Bonnie++

Starting Bonnie++

bonnie++ -d /tmp -r 2048 -u username

Bonnie++ Readme.

Disk io with bonnie++ on Vultr/Sydney

Writing a byte at a time...done
Writing intelligently...done
Rewriting...done
Reading a byte at a time...done
Reading intelligently...done
start 'em...done...done...done...done...done...
Create files in sequential order...done.
Stat files in sequential order...done.
Delete files in sequential order...done.
Create files in random order...done.
Stat files in random order...done.
Delete files in random order...done.
Version 1.97 ------Sequential Output------ --Sequential Input- --Random-
Concurrency 1 -Per Chr- --Block-- -Rewrite- -Per Chr- --Block-- --Seeks--
Machine Size K/sec %CP K/sec %CP K/sec %CP K/sec %CP K/sec %CP /sec %CP
servername 4G 656 99 308954 68 113706 33 1200 92 188671 30 10237 251
Latency 26067us 119ms 179ms 29139us 26069us 16118us
Version 1.97 ------Sequential Create------ --------Random Create--------
servername -Create-- --Read--- -Delete-- -Create-- --Read--- -Delete--
files /sec %CP /sec %CP /sec %CP /sec %CP /sec %CP /sec %CP
16 +++++ +++ +++++ +++ +++++ +++ +++++ +++ +++++ +++ +++++ +++
Latency 1463us 703us 880us 263us 119us 593us
1.97,1.97,servername,1,1528177870,4G,,656,99,308954,68,113706,33,1200,92,188671,30,10237,251,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,26067us,119ms,179ms,29139us,26069us,16118us,1463us,703us,880us,263us,119us,593us

Disk io with bonnie++ on Digital Ocean/London

Writing a byte at a time...done
Writing intelligently...done
Rewriting...done
Reading a byte at a time...done
Reading intelligently...done
start 'em...done...done...done...done...done...
Create files in sequential order...done.
Stat files in sequential order...done.
Delete files in sequential order...done.
Create files in random order...done.
Stat files in random order...done.
Delete files in random order...done.
Version 1.97 ------Sequential Output------ --Sequential Input- --Random-
Concurrency 1 -Per Chr- --Block-- -Rewrite- -Per Chr- --Block-- --Seeks--
Machine Size K/sec %CP K/sec %CP K/sec %CP K/sec %CP K/sec %CP /sec %CP
servername 4G 699 99 778636 74 610414 60 1556 99 1405337 59 +++++ +++
Latency 17678us 10099us 17014us 7027us 3067us 2366us
Version 1.97 ------Sequential Create------ --------Random Create--------
servername -Create-- --Read--- -Delete-- -Create-- --Read--- -Delete--
files /sec %CP /sec %CP /sec %CP /sec %CP /sec %CP /sec %CP
16 +++++ +++ +++++ +++ +++++ +++ +++++ +++ +++++ +++ +++++ +++
Latency 1243us 376us 611us 108us 59us 181us
1.97,1.97,servername,1,1528186398,4G,,699,99,778636,74,610414,60,1556,99,1405337,59,+++++,+++,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,17678us,10099us,17014us,7027us,3067us,2366us,1243us,376us,611us,108us,59us,181us

Disk io with bonnie++ on UpCloud/Singapore

Writing a byte at a time...done
Writing intelligently...done
Rewriting...done
Reading a byte at a time...done
Reading intelligently...done
start 'em...done...done...done...done...done...
Create files in sequential order...done.
Stat files in sequential order...done.
Delete files in sequential order...done.
Create files in random order...done.
Stat files in random order...done.
Delete files in random order...done.
Version 1.97 ------Sequential Output------ --Sequential Input- --Random-
Concurrency 1 -Per Chr- --Block-- -Rewrite- -Per Chr- --Block-- --Seeks--
Machine Size K/sec %CP K/sec %CP K/sec %CP K/sec %CP K/sec %CP /sec %CP
servername 4G 1014 99 407179 24 366622 32 2137 99 451886 17 +++++ +++
Latency 11297us 54232us 16443us 4949us 44883us 1595us
Version 1.97 ------Sequential Create------ --------Random Create--------
servername -Create-- --Read--- -Delete-- -Create-- --Read--- -Delete--
files /sec %CP /sec %CP /sec %CP /sec %CP /sec %CP /sec %CP
16 +++++ +++ +++++ +++ +++++ +++ +++++ +++ +++++ +++ +++++ +++
Latency 264us 340us 561us 138us 66us 327us
1.97,1.97,servername,1,1528226703,4G,,1014,99,407179,24,366622,32,2137,99,451886,17,+++++,+++,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,11297us,54232us,16443us,4949us,44883us,1595us,264us,340us,561us,138us,66us,327us

Now read this site on how to make sense of this data

 

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Filed Under: CDN, Cloud, Cloudflare, Digital Ocean, disk, Domain, ExactDN, HTTPS, Performance, PHP, php72, Scalability, Scalable, SEO, Ubuntu, UI, UpCloud, VM, Vultr, Wordpress Tagged With: and, can, comparing, Concurrent Users etc, cpu, Digital Ocean and UpCloud - Part 2 of 4, Disk, How, Latency, measure, on, Performance, ubuntu, vm, vultr, you

Measuring VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 1 of 4

June 2, 2018 by Simon

How can you measure VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 1 of 4. Update: I moved my domain to UpCloud.

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Update (June 2018): I moved my domain to UpCloud (they are that awesome). Use this link to signup and get $25 free credit. Read the steps I took to move my domain to UpCloud here.

Upcloud Site Speed in GTMetrix

Comparing Digital Ocean/Vultr and UpCloud Disk IO

I have a number of guides on moving away from CPanel, Setting up VM’s on AWS, Vultr or Digital Ocean (all in the search of extra performance) but how do you know when a server performance is ok apart from running GT Metrix and other external site benchmarking tools.

This post is split up as it was too long.

Read Part 1, Part 2, Part 3 or Part 4

Spoiler: It all depends on where your server is located and what you do with it (Tweaks will improve the performance).

P.S This is NOT a paid endorsement or conclusive test (just a quick benchmark/review).

What does your server do?

You need to know what your server does 24/7 and what resources the services need.

I use htop to view real-time and historical usage data for each process.

htop

Tweaking Advice

A friend gave me good advice re-tweaking a cheap host to get good performance

yeah but you are trying to get speed out of budget hosting. Good, fast, cheap, pick 2.

— Kerry Hoath (@khoath) June 2, 2018

I am not a fan of just throwing more money at a host and expecting better performance. Host have unique features and cons., there is no shortage of hosts or host cons.

How can you run synthetic benchmarks to determine comparable performance metrics?

WARNING: Comparing synthetic benchmarks can be far removed from real-world speeds. Benchmark results below were from 3 different servers I have on 3 different hosts in three different locations (the only thing the same was the use of Ubuntu 16.04 $5/m servers). These results are not scientific and should not be used to compare host providers. Benchmark runs were one-off (not averages over multiple timezones/days).

Disk Performance

Speaking of disk performance I noticed this the other day on the RunCloud blog. Faster than SSD (UpCloud)?

UpCloud Faster-than-SSD Cloud Hosting Server (Promo Code Inside)

Runcloud is a server management console that can interface with your domains (read my old review here).  I don’t use Runcloud but it is great for those who need a GUI to help manage VM via a dashboard. However, I prefer to know what is going on under the hood. I have investigated webmin in the past though.

Let’s do a quick IO benchmark test between UpCloud, Digital Ocean and Vultr on similarly low end $5/m servers,

Good advice on command line benchmarking tools from a friend.

depends on what sort of load you want to simulate. iozone is old but reliable. bonny might give you more figures you want.

— Kerry Hoath (@khoath) June 2, 2018


Installing iozone to test disk performance

I searched for a post on using iozone (Thanks thegeekstuff).  I will be reviewing the “Writer report” and “Reader report”. Read more about iozone here.

View the iozone page for how to break down results.

iozone results breakdown

(image snip from http://www.iozone.org/)

Install iozone on Ubuntu

sudo apt-get install iozone3

Run an iozone disk test and output the results to a spreadsheet.

iozone -a -b iozone.xls

Now let’s run a Read/Write test on Vultr/Digital Ocean and UpCloud. Multiple runs were not performed, this is not a scientific test (just a simple benchmark test (as is, ignoring sever load and local infrastructure/timezone load)).

iozone Benchmark results for Vultr “Read” (Sydney)

 “4” “8” “16” “32” “64” “128” “256” “512” “1024” “2048” “4096” “8192” “16384”
6421337303363612427406245647866421025
1282248149353656641359587082197413595811720614
2561884399269916138790453667079597167856870205687020
51231404883736016368473342625234610256263881650671425684095
1024161780819392073411938399976240487784614246308368058850836609617
2048192651025696784423683499761839370754596052896324354252449715854707314
409617016832151300420992050017004751325486984553892463647681492852162070354347346
8192206342423293463203763293728032214853232699362643136507063789200411060337150454350542
163841738553277836233976133679205369344231715013524291339358630040243552531345657426938452488861
327680000295289435371533574875376815547196133890280339499527352222542914
655360000405748936107893619967380007832753273591212360718817704262826659
1310720000355227018907425275167372733935276071753893323473623411111378601
2621440000379858613020211491429371282532288163757963371551025924852481061
5242880000275875624879233705741180732821183093675988319636733943302396842

iozone Benchmark results for Digital Ocean “Read” (London)

4 “8” “16” “32” “64” “128” “256”  “512”  “1024”  “2048” “4096”  “8192”  “16384”
644564786710039790061791040217812902017
12847174347082197854812497958961056714010779307
256484091170731328271916986843310148242106515981E+07
51247426166909408814039993042929638369100440891E+0710044089
102442490535917516620834375375999300377104549847E+0671131619946527
204838854316967792660354968456291040188398080369E+06790383693084977817519
40962506983595323162636116953144777437962250286E+068081580768397280815808240513
81923665114485046354793176141364627712061086086E+0665699835732541716603366334025479317
163843673501482858454161826187150661476162988726E+06643031059840336402750604615947918833405527
327680000469254261409296E+06629564252312246545707578110845134753702577
655360000631543058301316E+06644469562191256473838533859542481183679324
1310720000613000264614966E+06595806859834236387547613807839948883602079
2621440000645674663237276E+06650414663901766486151643396339551653654188
5242880000166733763814566E+06644570864487146421071598120041551853770740

iozone Benchmark results for UpCloud “Read” (Singapore)

 “4” “8” “16” “32” “64” “128” “256” “512” “1024” “2048” “4096” “8192” “16384”
6464210256421025108215241290201715972885
128488928164061389129573107793071420079414200794
25653206713879045107583228815202102450711281227712228612
512430525051154228844453823403670919528394979754017010235583
10244339202476263058212716163794681951146745106479979818391810230845
20484204968531948458008515816563624356663780055953632685108979403678229438
409645260135556581481794854045047301864575963458102806007355691953886209456281934
8192429829550190935927357603670267813416082655585563665275466553692679206564661264437634
163844282172584955863139196635840674195866570546423097553662265585756442970452703237847773901898
327680000582546054234086504198666538563653296426343526307637186053705971
655360000690807566231166493259660973863118056483610548967440359823561526
1310720000565018057189492465429539125334959115784844536740837334903582175
2621440000681462766912506189661590678660816455799913524791941212503637601
5242880000640476463092635673979575160962882456305103597868039119843767116

iozone Benchmark results for Vultr “Write” (Sydney)

 “4” “8” “16” “32” “64” “128” “256” “512” “1024” “2048” “4096” “8192” “16384”
64289322532815507625429630566551
128398921465304434078417212669577821147
256530031613985820398474937891956815414370025
512387576754083709019819085702295609421924123496091
102429723344852271608992348885407381734012031371072453601636
204840869763465569538313581345496571295458821154797520964207258493
409623615043380412157741245025820832809958137133991426992108310046821481431
819261111366667780628671521977982582429487594787009110463787911921023592453248
16384435454706149718313845499893495888068812778842885820591941120839610862672406590
327680000465196786067938881627294890917968147872369871329842843
655360000515057790172937568915601897235867197907562852002743856
13107200005010914804928131478708868802398053336846301117578633185
2621440000387126323185323656473258405744369599422554468992453563
5242880000325588380450392965451608303255355148386250432054416512

iozone Benchmark results for Digital Ocean “Write” (London)

 “4” “8” “16” “32” “64” “128” “256” “512” “1024” “2048” “4096” “8192” “16384”
64831569566551127944713639611392258
1286524881319723142102399089116631391561553
2561185399115232315343421598292182669517075891514860
51211665991296159139918916209801620980136192015897791672748
1024107919013212001584972191756215926121701108171812014629601643814
20481210394147017216217191550584179637816437531713598175958116491171488257
40969165131287575157471814065941742237173414816524181583280159934616610451533532
8192110974513187481178567154420115023401371492146674714995211479759156487812912921347609
163841106205128208413740371503649142939814614071496119157813215472891333431120337111988151501316
327680000127091414065891513114146822615583031552038151633614432801440360
655360000131932213279841311504141195512669881359645138644613470921368295
1310720000110065812293261227197131863112655521233306122774712378961233502
2621440000116716010640781155828118518510861521193673108087210626111141960
524288000097783511248161052757121918311289721140177109195411416351132063

iozone Benchmark results for UpCloud “Write” (Singapore)

 “8” “16” “32” “64” “128” “256” “512” “1024” “2048” “4096” “8192” “16384”
6411432231255511156243614525281279447
128145176414061361543594150465918525201749872
2561642294182980819708711855098180216719529472000242
51215374241854787180187322947961983258212452618957211417662
1024143413815534421609925193135920983752044438187241917683451892218
20481562145190177118172811848169196709712962402267786208149719157682007554
409616253721966378192474113420921950306207817519148731459656199515221028491326855
8192144406218083301956503192439721273002042328213563019864782062557206131913370161812049
163841667066182024818984952051339201253021110802119806149121720608751974254193478918158231921911
327680000205750614545372075621207089918697952052896189234718553821873440
655360000206712720776732088994217980920874712099108190472316425051832204
1310720000123466318249591304340177551412874811560379163199210856091675467
2621440000685774808487823824662524681762548308814946645663732176
5242880000547296517384503422521173538714518429528950529593512944

Here is my quick unscientific take on a one pass benchmark results above.

Vultr (Read) Vultr (Write) Digital Ocean (Write) UpCloud (Read) UpCloud (Write)

These results need some decoding.

Next >>

Read Part 1, Part 2, Part 3 or Part 4

Ask a question or recommend an article

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Update (June 2018): I moved my domain to UpCloud (they are that awesome). Use this link to signup and get $25 free credit. Read the steps I took to move my domain to UpCloud here.

Upcloud Site Speed in GTMetrix

Revision History

v1.2 added the fact that I Moved to UpCloud.

v1.1 Re ran iozone -a -b iozone.xls on all servers.

v1.0 Initial post

Filed Under: CDN, Cloud, Cloudflare, Digital Ocean, disk, ExactDN, HTTPS, NGINX, Performance, PHP, php72, Scalability, Scalable, Storage, Ubuntu, UpCloud, VM, Vultr, Wordpress Tagged With: and, comparing, Concurrent, cpu, Digital, Disk Latency, etc, Measuring, Ocean, on, Performance, ubuntu, UpCloud, Users, vm, vultr

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