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UpCloud

I moved my domain to UpCloud (on the other side of the world) from Vultr (Sydney) and could not be happier with the performance.

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I moved my domain to UpCloud (on the other side of the world) from Vultr (Sydney) and could not be happier with the performance. Here is what I did to set up a complete Ubuntu 18.04 system (NGINX, PHP, MySQL, WordPress etc). This is not a paid review (just me documenting my steps over 2 days).

Background (CPanel hosts)

In 1999 I hosted my first domain (www.fearby.com) on a host in Seattle (for $10 USD a month), the host used CPanel and all was good.  After a decade I was using the domain more for online development and the website was now too slow (I think I was on dial-up or ADSL 1 at the time). I moved my domain to an Australian host (for $25 a month).

After 8 years the domain host was sold and performance remained mediocre. After another year the new host was sold again and performance was terrible.

I started receiving Resource Limit Is Reached warnings (basically this was a plot by the new CPanel host to say “Pay us more and this message will go away”).

Page load times were near 30 seconds.

cpenal_usage_exceeded

The straw that broke the camel’s back was their demand of $150/year for a dodgy SSL certificate.

I needed to move to a self-managed server where I was in control.

Buying a Domain Name

Buy a domain name from Namecheap here.

Domain names for just 88 cents!

Self Managed Server

I found a good web IDE ( http://www.c9.io/ ) that allowed me to connect to a cloud VM.  C9 allowed me to open many files and terminal windows and reconnect to them later. Don’t get excited, though, as AWS has purchased C9 and it’s not the same.

C9 IDE

C9 IDE

I spun up a Digital Ocean Server at the closest data centre in Singapore. Here was my setup guide creating a Digital Ocean VM, connecting to it with C9 and configuring it. I moved my email to G Suite and moved my WordPress to Digital Ocean (other guides here and here).

I was happy since I could now send emails via CLI/code, set up free SSL certs, add second domain email to G Suite and Secure G Suite. No more usage limit errors either.

Self-managing servers require more work but it is more rewarding (flexible, faster and cheaper).  Page load times were now near 20 seconds (10-second improvement).

Latency Issue

Over 6 months, performance on Digital Ocean (in Singapore) from Australia started to drop (mentioned here).  I tried upgrading the memory but that did not help (latency was king).

Moved the website to Australia

I moved my domain to Vultr in Australia (guide here and here). All was good for a year until traffic growth started to increase.

Blog Growth

I tried upgrading the memory on Vultr and I setup PHP child workers, set up Cloudflare.

GT Metrix scores were about a “B” and Google Page Speed Scores were in the lower 40’s. Page loads were about 14 seconds (5-second improvement).

Tweaking WordPress

I set up an image compression plugin in WordPress then set up a cloud image compression and CDN Plugin from the same vendor.  Page Speed info here.

GT Metrix scores were now occasionally an “A” and Page Speed scores were in the lower 20’s. Page loads were about 3-5 seconds (10-second improvement).

A mixed bag from Vultr (more optimisation and performance improvements were needed).

This screenshot is showing poor www.gtmetrix.com scores , pool google page speed index scores and upgrading from 1GB to 2GB memory on my server.

Google Chrome Developer Console Audit Results on Vultr hosted website were not very good (I stopped checking as nothing helped).

This is a screenshot showing poor site performance (screenshot taken in Google Dev tools audit feature)

The problem was the Vultr server (400km away in Sydney) was offline (my issue) and everything above (adding more memory, adding 2x CDN’s (EWWW and Cloudflare), adding PHP Child workers etc) did not seem to help???

Enter UpCloud…

Recently, a friend sent a link to a blog article about a host called “UpCloud” who promised “Faster than SSD” performance.  This can’t be right: “Faster than SSD”? I was intrigued. I wanted to check it out as I thought nothing was faster than SSD (well, maybe RAM).

I signed up for a trial and ran a disk IO test (read the review here) and I was shocked. It’s fast. Very fast.

Summary: UpCloud was twice as fast (Disk IO and CPU) as Vultr (+ an optional $4/m firewall and $3/m for 1x backup).

This is a screenshot showing Vultr.com servers getting half the read and write disk io performance compared to upcloud.com.

fyi: Labels above are K Bytes per second. iozone loops through all file size from 4 KB to 16,348 KB and measures through the reads per second. To be honest, the meaning of the numbers doesn’t interest me, I just want to compare apples to apples.

This is am image showing iozone results breakdown chart (kbytes per sec on vertical axis, file size in horizontal axis and transfer size on third access)

(image snip from http://www.iozone.org/ which explains the numbers)

I might have to copy my website on UpCloud and see how fast it is.

Where to Deploy and Pricing

UpCloud Pricing: https://www.upcloud.com/pricing/

UpCloud Pricing

UpCloud does not have a data centre in Australia yet so why choose UpCloud?

Most of my site’s visitors are based in the US and UpCloud have disk IO twice as fast as Vultr (win-win?).  I could deploy to Chicago?

This image sows most of my visitors are in the US

My site’s traffic is growing and I need to ensure the site is fast enough in the future.

This image shows that most of my sites visitors are hitting my site on week days.

Creating an UpCloud VM

I used a friend’s referral code and signed up to create my first VM.

FYI: use my Referral code and get $25 free credit.  Sign up only takes 2 minutes.

https://www.upcloud.com/register/?promo=D84793

When you click the link above you will receive 25$ to try out serves for 3 days. You can exit his trail and deposit $10 into UpCloud.

Trial Limitations

The trial mode restrictions are as following:

* Cloud servers can only be accessed using SSH, RDP, HTTP or HTTPS protocols
* Cloud servers are not allowed to send outgoing e-mails or to create outbound SSH/RDP connections
* The internet connection is restricted to 100 Mbps (compared to 500 Mbps for non-trial accounts)
* After your 72 hours free trial, your services will be deleted unless you make a one-time deposit of $10

UpCloud Links

The UpCloud support page is located here: https://www.upcloud.com/support/

More UpCloud links to read:

Signing up to UpCloud

Navigate to https://upcloud.com/signup and add your username, password and email address and click signup.

New UpCloud Signup Page

Add your address and payment details and click proceed (you don’t need to pay anything ($1 may be charged and instantly refunded to verify the card)

Add address and payment details

That’s it, check yout email.

Signup Done

Look for the UpCloud email and click https://my.upcloud.com/

Check Email

Now login

Login to UpCloud

Now I can see a dashboard 🙂

UpCloud Dashboard

I was happy to see 24/7 support is available.

This image shows the www.upcloud.com live chat

I opted in for the new dashboard

UpCloud new new dashboard

Deploy My First UpCloud Server

This is how I deployed a server.

Note: If you are going to deploy a server consider using my referral code and get $25 credit for free.

Under the “deploy a server” widget I named the server and chose a location (I think I was supposed to use an FQDN name -e.g., “fearby.com”). The deployment worked though. I clicked continue, then more options were made available:

  1. Enter a short server description.
  2. Choose a location (Frankfurt, Helsinki, Amsterdam, Singapore, London and Chicago)
  3. Choose the number of CPU’s and amount of memory
  4. Specify disk number/names and type (MaxIOPS or HDD).
  5. Choose an Operating System
  6. Select a Timezone
  7. Define SSH Keys for access
  8. Allowed login methods
  9. Choose hardware adapter types
  10. Where the send the login password

Deploy Server

FYI: How to generate a new SSH Key (on OSX or Ubuntu)

Output

Did the key export? (yes)

> /temp# ls /temp/ -al
> drwxr-xr-x 2 root root 4096 Jun 9 15:33 .
> drwxr-xr-x 27 root root 4096 Jun 8 14:25 ..
> -rw——- 1 user user 1766 Jun 9 15:33 example_rsa
> -rw-r–r– 1 user user 396 Jun 9 15:33 example_rsa.pub

“example_rsa” is the private key and “example_rsa.pub “is the public key.

  • The public key needs to be added to the server to allow access.
  • The private key needs to be added to any local ssh program used for remote access.

Initialisation script (after deployment)

I was pleased to see an initialization script section that calls actions after the server is deployed. I configured the initialisation script to pull down a few GB of backups from my Vultr website in Sydney (files now removed).

This was my Initialisation script:

Confirm and Deploy

I clicked “Confirm and deploy” but I had an alert that said trial mode can only deploy servers up to 1024MB of memory.

This image shows I cant deploy servers with 2/GB in trial modeExiting UpCloud Trial Mode

I opened the dashboard and clicked My Account then Billing, I could see the $25 referral credit but I guess I can’t use that in Trial.

I exited trial mode by depositing $10 (USD).

View Billing Details

Make a manual 1-time deposit of $10 to exit trial mode.

Deposit $10 to exit the trial

FYI: Server prices are listed below (or view prices here).

UpCloud Pricing

Now I can go back and deploy the server with the same settings above (1x CPU, 2GB Memory, Ubuntu 18.04, MaxIOPS Storage etc)

Deployment takes a few minutes and depending on how you specified a password may be emailed to you.

UpCloud Server Deployed

The server is now deployed; now I can connect to it with my SSH program (vSSH).  Simply add the server’s IP, username, password and the SSH private key (generated above) to your ssh program of choice.

fyi: The public key contents start with “ssh-rsa”.

This image shows me connecting to my sever via ssh

I noticed that the initialisation script downloaded my 2+GB of files already. Nice.

UpCloud Billing Breakdown

I can now see on the UpCloud billing page in my dashboard that credit is deducted daily (68c); at this rate, I have 49 days credit left?

Billing Breakdown

I can manually deposit funds or set up automatic payments at any time 🙂

UpCloud Backup Options

You do not need to setup backups but in case you want to roll back (if things stuff up), it is a good idea. Backups are an additional charge.

I have set up automatic daily backups with an auto deletion after 2 days

To view backup scheduled click on your deployed server then click backup

List of UpCloud Backups

Note: Backups are charged at $0.056 for every GB stored – so $5.60 for every 100GB per month (half that for 50GB etc)

You can take manual backups at any time (and only be charged for the hour)

UpCloud Firewall Options

I set up a firewall at UpCloud to only allow the minimum number of ports (UpCloud DNS, HTTP, HTTPS and My IP to port 22).  The firewall feature is charged at $0.0056 an hour ($4.03 a month)

I love the ability to set firewall rules on incoming, destination and outgoing ports.

To view your firewall click on your deployed server then click firewall

UpCloud firewall

Update: I modified my firewall to allow inbound ICMP (IPv4/IPv6) and UDP (IPv4/IPv6) packets.

(Note: Old firewall screenshot)

Firewall Rules Allow port 80, 443 and DNS

Because my internet provider has a dynamic IP, I set up a VPN with a static IP and whitelisted it for backdoor access.

Local Ubuntu ufw Firewall

I duplicated the rules in my local ufw (2nd level) firewall (and blocked mail)

UpCloud Download Speeds

I pulled down a 1.8GB Ubuntu 18.08 Desktop ISO 3 times from gigenet.com and the file downloaded in 32 seconds (57MB/sec). Nice.

Install Common Ubuntu Packages

I installed common Ubuntu packages.

Timezone

I checked the server’s time (I thought this was auto set before I deployed)?

I reset the time to Australia/Sydney.

Now the timezone is set 🙂

Shell History

I increased the shell history.

SSH Login

I created a ~/.ssh/authorized_keys file and added my SSH public key to allow password-less logins.

I added my pubic ssh key, then exited the ssh session and logged back in. I can now log in without a password.

Install NGINX

nginx/1.14.0 is now installed.

A quick GT Metrix test.

This image shows awesome static nginx performance ratings of of 99%

Install MySQL

Run these commands to install and secure MySQL.

Securing the MySQL server deployment.
> Would you like to setup VALIDATE PASSWORD plugin?: n
> New password: **********************************************
> Re-enter new password: **********************************************
> Remove anonymous users? (Press y|Y for Yes, any other key for No) : y
> Disallow root login remotely? (Press y|Y for Yes, any other key for No) : y
> Remove test database and access to it? (Press y|Y for Yes, any other key for No) : y
> Reload privilege tables now? (Press y|Y for Yes, any other key for No) : y
> Success.

I disabled the validate password plugin because I hate it.

MySQL Ver 14.14 Distrib 5.7.22 is now installed.

Set MySQL root login password type

Set MySQL root user to authenticate via “mysql_native_password”. Run the “mysql” command.

Now let’s set the root password authentication method to “mysql_native_password”

Check authentication method.

Now we need to flush permissions.

Done.

Install PHP

Install PHP 7.2

PHP 7.2.5, Zend Engine v3.2.0 with Zend OPcache v7.2.5-1 is now installed. Do update PHP frequently.

I made the following changes in /etc/php/7.2/fpm/php.ini

> cgi.fix_pathinfo=0
> max_input_vars = 1000
> memory_limit = 1024M
> max_file_uploads = 20M
> post_max_size = 20M

Install PHP Modules

sudo apt-get install php-pear php7.2-curl php7.2-dev php7.2-mbstring php7.2-zip php7.2-mysql php7.2-xml

Install PHP FPM

Configure PHP FPM config.

Edit /etc/php/7.2/fpm/php.ini

> cgi.fix_pathinfo=0
> max_input_vars = 1000
> memory_limit = 1024M
> max_file_uploads = 20M
> post_max_size = 20M

Reload php sudo service.

Install PHP Modules

Configuring NGINX

If you are not comfortable editing NGINX config files read here, here and here.

I made a new “www root” folder, set permissions and created a default html file.

I edited the “root” key in “/etc/nginx/sites-enabled/default” file and set the root a new location (e.g., “/www-root”)

I added these performance tweaks to /etc/nginx/nginx.conf

> worker_cpu_affinity auto;
> worker_rlimit_nofile 100000

I add the following lines to “http {” section in /etc/nginx/nginx.conf

Check NGINX Status

Install Open SSL that supports TLS 1.3

This is a work in progress. The steps work just fine for me on Ubuntu 16.04. but not Ubuntu 18.04.?

Installing Adminer MySQL GUI

I will use the PHP based Adminer MySQL GUI to export and import my blog from one server to another. All I needed to do is install it on both servers (simple 1 file download)

Use Adminer to Export My Blog (on Vultr)

On the original server open Adminer (http) and..

  1. Login with the MySQL root account
  2. Open your database
  3. Choose “Save” as the output
  4. Click on Export

This image shows the export of the wordpress adminer page

Save the “.sql” file.

I used Adminer on the UpCloud server to Import My Blog

FYI: Depending on the size of your database backup you may need to temporarily increase your upload and post sizes limits in PHP and NGINX before you can import your database.

Edit /etc/php/7.2/fpm/php.ini
> max_file_uploads = 100M
> post_max_size =100M

And Edit: /etc/nginx/nginx.conf
> client_max_body_size 100M;

Don’t forget to reload NGINX config and restart NGINX and PHP. Take note of the maximum allowed file size in the screenshot below. I temporarily increased my upload limits to 100MB in order to restore my 87MB blog.

Now I could open Adminer on my UpCloud server.

  1. Create a new database
  2. Click on the database and click Import
  3. Choose the SQL file
  4. Click Execute to import it

Import MuSQL backup with Adminer

Don’t forget to create a user and assign permissions (as required – check your wp-config.php file).

Import MySQL Database

Tip: Don’t forget to lower the maximum upload file size and max post size after you import your database,

Cloudflare DNS

I use Cloudflare to manage DNS, so I need to tell it about my new server.

You can get your server’s IP details from the UpCloud dashboard.

Find IP

At Cloudflare update your DNS details to point to the server’s new IPv4 (“A Record”) and IPv6 (“AAAA Record”).

Cloudflare DNS

Domain Error

I waited an hour and my website was suddenly unavailable.  At first, I thought this was Cloudflare forcing the redirection of my domain to HTTP (that was not yet set up).

DNS Not Replicated Yet

I chatted with UpCloud chat on their webpage and they kindly assisted me to diagnose all the common issues like DNS values, DNS replication, Cloudflare settings and the error was pinpointed to my NGINX installation.  All NGINX config settings were ok from what we could see?  I uninstalled NGINX and reinstalled it (and that fixed it). Thanks UpCloud Support 🙂

Reinstalled NGINX

I reinstalled NGINX and reconfigured /etc/nginx/nginx.conf (I downloaded my SSL cert from my old server just in case).

Here is my /etc/nginx/nginx.conf file.

Here is my /etc/nginx/sites-available/default file (fyi, I have not fully re-setup TLS 1.3 yet so I commented out the settings)

SSL Labs SSL Certificate Check

All good thanks to the config above.

SSL Labs

Install WP-CLI

I don’t like setting up FTP to auto-update WordPress plugins. I use the WP-CLI tool to manage WordPress installations by the command line. Read my blog here on using WP-CLI.

Download WP-CLI

Move WP-CLI to the bin folder as “wp”

Test wp

Update WordPress Plugins

Now I can run “wp plugin update” to update all WordPress plugins

Update WordPress Core

WordPress core file can be updated with “wp core update“

Troubleshooting: Use the flag “–allow-root “if wp needs higher access (unsafe action though).

Install PHP Child Workers

I edited the following file to setup PHP child workers /etc/php/7.2/fpm/pool.d/www.conf

Changes

> pm = dynamic
> pm.max_children = 40
> pm.start_servers = 15
> pm.min_spare_servers = 5
> pm.max_spare_servers = 15
> pm.process_idle_timeout = 30s;
> pm.max_requests = 500;
> php_admin_value[error_log] = /var/log/www-fpm-php.www.log
> php_admin_value[memory_limit] = 512M

Restart PHP

Test NGINX config, reload NGINX config and restart NGINX

Output (14 workers are ready)

Memory Tweak (set at your own risk)

vm.swappiness = 1

Setting swappiness to a value of 1 all but disables the swap file and tells the Operating System to aggressively use ram, a value of 10 is safer. Only set this if you have enough memory available (and free).

Possible swappiness settings:

> vm.swappiness = 0 Swap is disabled. In earlier versions, this meant that the kernel would swap only to avoid an out of memory condition when free memory will be below vm.min_free_kbytes limit, but in later versions, this is achieved by setting to 1.[2]> vm.swappiness = 1 Kernel version 3.5 and over, as well as Red Hat kernel version 2.6.32-303 and over: Minimum amount of swapping without disabling it entirely.
> vm.swappiness = 10 This value is sometimes recommended to improve performance when sufficient memory exists in a system.[3]
> vm.swappiness = 60 The default value.
> vm.swappiness = 100 The kernel will swap aggressively.

The “htop” tool is a handy memory monitoring tool to “top”

Also, you can use good old “watch” command to show near-live memory usage (auto-refreshes every 2 seconds)

Script to auto-clear the memory/cache

As a habit, I am setting up a cronjob to check when free memory falls below 100MB, then the cache is automatically cleared (freeing memory).

Script Contents: clearcache.sh

I set the cronjob to run every 15 mins, I added this to my cronjob.

Sample log output

I will check the log (/scripts/clearcache.log) in a few days and view the memory trends.

After 1/2 a day Ubuntu 18.04 is handling memory just fine, no externally triggered cache clears have happened 🙂

Free memory over time

I used https://crontab.guru/every-hour to set the right schedule in crontab.

I rebooted the VM.

Update: I now use Nixstats monitoring

Swap File

FYI: Here is a handy guide on viewing swap file usage here. I’m not using swap files so it is only an aside.

After the system rebooted I checked if the swappiness setting was active.

Yes, swappiness is set.

File System Tweaks – Write Back Cache (set at your own risk)

First, check your disk name and file system

Take note of your disk name (e.g vda1)

I used TuneFS to enable writing data to the disk before writing to the journal. tunefs is a great tool for setting file system parameters.

Warning (snip from here): “I set the mode to journal_data_writeback. This basically means that data may be written to the disk before the journal. The data consistency guarantees are the same as the ext3 file system. The downside is that if your system crashes before the journal gets written then you may lose new data — the old data may magically reappear.“

Warning this can corrupt your data. More information here.

I ran this command.

I edited my fstab to append the “writeback,noatime,nodiratime” flags for my volume after a reboot.

Edit FS Tab:

I added “writeback,noatime,nodiratime” flags to my disk options.

Updating Ubuntu Packages

Show updatable packages.

Update Packages.

Unattended Security Updates

Read more on Ubuntu 18.04 Unattended upgrades here, here and here.

Install Unattended Upgrades

Enable Unattended Upgrades.

Now I configure what packages not to auto-update.

Edit /etc/apt/apt.conf.d/50unattended-upgrades

Find “Unattended-Upgrade::Package-Blacklist” and add packages that you don’t want automatically updated, you may want to manually update these (and monitor updates).

I prefer not to auto-update critical system apps (I will do this myself).

FYI: You can find installed packages by running this command:

Enable automatic updates by editing /etc/apt/apt.conf.d/20auto-upgrades

Edit the number at the end (the number is how many days to wait before updating) of each line.

> APT::Periodic::Update-Package-Lists “1”;
> APT::Periodic::Download-Upgradeable-Packages “1”;
> APT::Periodic::AutocleanInterval “7”;
> APT::Periodic::Unattended-Upgrade “1”;

Set to “0” to disable automatic updates.

The results of unattended-upgrades will be logged to /var/log/unattended-upgrades

Update packages now.

Almost done.

I Rebooted

GT Metrix Score

I almost fell off my chair. It’s an amazing feeling hitting refresh in GT Metrix and getting sub-2-second score consistently (and that is with 17 assets loading and 361KB of HTML content)

0.9sec load times

WebPageTest.org Test Score

Nice. I am not sure why the effective use of CDN has an X rating as I have the EWWW CDN and Cloudflare. First Byte time is now a respectable “B”, This was always bad.

Update: I found out the longer you set cache delays in Cloudflare the higher the score.

Web Page Test

GT Metrix has a nice historical breakdown of load times (night and day).

Upcloud Site Speed in GTMetrix

Google Page Speed Insight Desktop Score

I benchmarked with https://developers.google.com/speed/pagespeed/insights/

This will help with future SEO rankings. It is well known that Google is pushing fast servers.

100% Desktop page speed score

Google Chrome 70 Dev Console Audit (Desktop)

100% Chrome Audit Score

This is amazing, I never expected to get this high score.  I know Google like (and are pushing) sub-1-second scores.

My site is loading so well it is time I restored some old features that were too slow on other servers

  • I disabled Lazy loading of images (this was not working on some Android devices)
  • I re-added the News Widget and news images.

GTMetrix and WebpageTest sores are still good (even after adding bloat)

Benchmarks are still good

My WordPress site is not really that small either

Large website

FYI: WordPress Plugins I use.

These are the plugins I use.

  • Autoptimize – Optimises your website, concatenating the CSS and JavaScript code, and compressing it.
  • BJ Lazy Load (Now Disabled) – Lazy image loading makes your site load faster and saves bandwidth.
  • Cloudflare – Cloudflare speeds up and protects your WordPress site.
  • Contact Form 7 – Just another contact form plugin. Simple but flexible.
  • Contact Form 7 Honeypot – Add honeypot anti-spam functionality to the popular Contact Form 7 plugin.
  • Crayon Syntax Highlighter – Supports multiple languages, themes, highlighting from a URL, local file or post text.
  • Democracy Poll – Allows creating democratic polls. Visitors can vote for more than one answer & add their own answers.
  • Display Posts Shortcode – Display a listing of posts using the shortcode
  • EWWW Image Optimizer – Reduce file sizes for images within WordPress including NextGEN Gallery and GRAND FlAGallery. Uses jpegtran, optipng/pngout, and gifsicle.
  • GDPR Cookie Consent – A simple way to show that your website complies with the EU Cookie Law / GDPR.
  • GTmetrix for WordPress – GTmetrix can help you develop a faster, more efficient, and all-around improved website experience for your users. Your users will love you for it.
  • TinyMCE Advanced – Enables advanced features and plugins in TinyMCE, the visual editor in WordPress.
  • Wordfence Security – Anti-virus, Firewall and Malware Scan
  • WP Meta SEO – WP Meta SEO is a plugin for WordPress to fill meta for content, images and main SEO info in a single view.
  • WP Performance Score Booster – Speed-up page load times and improve website scores in services like PageSpeed, YSlow, Pingdom and GTmetrix.
  • WP SEO HTML Sitemap – A responsive HTML sitemap that uses all of the settings for your XML sitemap in the WordPress SEO by Yoast Plugin.
  • WP-Optimize – WP-Optimize is WordPress’s #1 most installed optimisation plugin. With it, you can clean up your database easily and safely, without manual queries.
  • WP News and Scrolling Widgets Pro – WP News Pro plugin with six different types of shortcode and seven different types of widgets. Display News posts with various designs.
  • Yoast SEO – The first true all-in-one SEO solution for WordPress, including on-page content analysis, XML sitemaps and much more.
  • YouTube – YouTube Embed and YouTube Gallery WordPress Plugin. Embed a responsive video, YouTube channel, playlist gallery, or live stream

How I use these plugins to speed up my site.

  • I use EWWW Image Optimizer plugin to auto-compress my images and to provide a CDN for media asset deliver (pre-Cloudflare). Learn more about ExactDN and EWWW.io here.
  • I use Autoptimize plugin to optimise HTML/CSS/JS and ensure select assets are on my EWWW CDN. This plugin also removes WordPress Emojis, removed the use of Google Fonts, allows you to define pre-configured domains, Async Javascript-files etc.
  • I use BJ Lazy Load to prevent all images in a post from loading on load (and only as the user scrolls down the page).
  • GTmetrix for WordPress and Cloudflare plugins are for information only?
  • I use WP-Optimize to ensure my database is healthy and to disable comments/trackbacks and pingbacks.

Let’s Test UpCloud’s Disk IO in Chicago

Looks good to me, Read IO is a little bit lower than UpCloud’s Singapore data centre but still, it’s faster than Vultr.  I can’t wait for more data centres to become available around the world.

Why is UpCloud Disk IO so good?

I asked UpCloud on Twitter why the Disk IO was so good.

  • “MaxIOPS is UpCloud’s proprietary block-storage technology. MaxIOPS is physically redundant storage technology where all customer’s data is located in two separate physical devices at all times. UpCloud uses InfiniBand (!) network to connect storage backends to compute nodes, where customers’ cloud servers are running. All disks are enterprise-grade SSD’s. And using separate storage backends, it allows us to live migrate our customers’ cloud servers freely inside our infrastructure between compute nodes – whether it be due to hardware malfunction (compute node) or backend software updates (example CPU vulnerability and immediate patching).“

My Answers to Questions to support

Q1) What’s the difference between backups and snapshots (a Twitter user said Snapshots were a thing)

A1) Backups and snapshots are the same things with our infrastructure.

Q2) What are charges for backup of a 50GB drive?

A2) We charge $0.06 / GB of the disk being captured. But capture the whole disk, not just what was used. So for a 50GB drive, we charge $0.06 * 50 = $3/month. Even if 1GB were only used.

  • Support confirmed that each backup is charged (so 5 times manual backups are charged 5 times). Setting up a daily auto backup schedule for 2 weeks would create 14 billable backup charges.
  • I guess a 25GB server will be $1.50 a month

Q3) What are data charges if I go over my 2TB quota?

A3) Outgoing data charges are $0.056/GB after the pre-configured allowance.

Q4) What happens if my balance hits $0?

A4) You will get notification of low account balance 2 weeks in advance based on your current daily spend. When your balance reaches zero, your servers will be shut down. But they will still be charged for. You can automatically top-up if you want to assign a payment type from your Control Panel. You deposit into your balance when you want. We use a prepaid model of payment, so you need to top up before using, not billing you after usage. We give you lots of chances to top-up.

Support Tips

  • One thing to note, when deleting servers (CPU, RAM) instances, you get the option to delete the storages separately via a pop-up window. Choose to delete permanently to delete the disk, to save credit. Any disk storage lying around even unattached to servers will be billed.
  • Charges are in USD.

I think it’s time to delete my domain from Vultr in Sydney.

Deleted my Vultr domain

I deleted my Vultr domain.

Delete Vultr Server

Done.

More Reading on UpCloud

https://www.upcloud.com/documentation/faq/

UpCloud Server Status

http://status.upcloud.com

Check out my new guide on Nixstats for awesome monitoring

What I would like

  1. Ability to name individual manual backups (tag with why I backed up).
  2. Ability to push user-defined data from my VM to the dashboard
  3. Cheaper scheduled backups
  4. Sydney data centres (one day)

Update: Post UpCloud Launch Tweaks (Awesome)

I had a look at https://www.webpagetest.org/ results to see where else I can optimise webpage delivery.

Optimisation Options

Disable dasjhicons.min.css (for unauthenticated WordPress users).

Find functions.php in the www root

Edit functions.php

Add the following

// Remove dashicons in frontend for unauthenticated users
add_action( 'wp_enqueue_scripts', 'bs_dequeue_dashicons' );
function bs_dequeue_dashicons() {
    if ( ! is_user_logged_in() ) {
        wp_deregister_style( 'dashicons' );
    }
}

HTTP2 Push

I added http2 to my listening servers

I tested a http2 push page by defining this in /etc/nginx/sites-available/default 

Once I tested that push (demo here) was working I then defined two files to push that were being sent from my server

I used the WordPress Plugin Autoptimize to remove Google font usage (this removed a number of files being loaded when my page loads).

I used the WordPress Plugin WP-Optimize plugin into to remove comments and disable pingbacks and trackbacks.

WordPress wp-config.php tweaks

Add 2FA Authentication to server logins.

I recently checked out YubiCo YubiKeys and I have secured my Linux servers with 2FA prompts at login. Read the guide here. I secured my WordPress too.

Tweaks Todo

  • Compress placeholder BJ Lazy Load Image (plugin is broken)
  • Solve 2x Google Analytics tracker redirects (done, switched to Matomo)

Conclusion

I love UpCloud’s fast servers, give them a go (use my link and get $25 free credit).

I love Cloudflare for providing a fast CDN.

I love ewww.io’s automatic Image Compression and Resizing plugin that automatically handles image optimisations and pre Cloudflare/first hit CDN caching.

Read my post about server monitoring with Nixstats here.

Let the results speak for themselves (sub <1 second load times).

Results

I hope this guide helps someone.

Please consider using my referral code and get $25 credit for free.

https://www.upcloud.com/register/?promo=D84793

2020 Update. I have stopped using Putty and WinSCP. I now use MobaXterm (a tabbed SSH client for Windows) as it is way faster than WinSCP and better than Putty. Read my review post of MobaXTerm here.

Ask a question or recommend an article

[contact-form-7 id=”30″ title=”Ask a Question”]

Revision History

v2.1 Newer GTMetrix scores

v2.0 New UpCloud UI Update and links to new guides.

v1.9 Spelling and grammar

v1.8 Trial mode gotcha (deposit money ASAP)

v1.7 Added RSA Private key info

v1.7 – Added new firewall rules info.

v1.6 – Added more bloat to the site, still good.

v1.5 Improving Accessibility

v1.4 Added Firewall Price

v1.3 Added wp-config and plugin usage descriptions.

v1.2 Added GTMetrix historical chart.

v1.1 Fixed free typos and added final conclusion images.

v1.0 Added final results

v0.9 added more tweaks (http2 push, removing unwanted files etc)

v0.81 Draft  – Added memory usage chart and added MaxIOPS info from UpCloud.

v0.8 Draft post.

I set the cronjob to run every 15 mins, I added this to my cronjob.

 

Sample log output

 

I will check the log (/scripts/clearcache.log) in a few days and view the memory trends.

After 1/2 a day Ubuntu 18.04 is handling memory just fine, no externally triggered cache clears have happened 🙂

Free memory over time

I used https://crontab.guru/every-hour to set the right schedule in crontab.

I rebooted the VM.

Update: I now use Nixstats monitoring

Swap File

FYI: Here is a handy guide on viewing swap file usage here. I’m not using swap files so it is only an aside.

After the system rebooted I checked if the swappiness setting was active.

 

Yes, swappiness is set.

File System Tweaks – Write Back Cache (set at your own risk)

First, check your disk name and file system

 

Take note of your disk name (e.g vda1)

I used TuneFS to enable writing data to the disk before writing to the journal. tunefs is a great tool for setting file system parameters.

Warning (snip from here): “I set the mode to journal_data_writeback. This basically means that data may be written to the disk before the journal. The data consistency guarantees are the same as the ext3 file system. The downside is that if your system crashes before the journal gets written then you may loose new data — the old data may magically reappear.“

Warning this can corrupt your data. More information here.

I ran this command.

 

I edited my fstab to append the “writeback,noatime,nodiratime” flags for my volume after a reboot.

Edit FS Tab:

 

I added “writeback,noatime,nodiratime” flags to my disk options.

 

Updating Ubuntu Packages

Show updatable packages.

 

Update Packages.

 

Unattended Security Updates

Read more on Ubuntu 18.04 Unattended upgrades here, here and here.

Install Unattended Upgrades

 

Enable Unattended Upgrades.

 

Now I configure what packages not to auto update.

Edit /etc/apt/apt.conf.d/50unattended-upgrades

Find “Unattended-Upgrade::Package-Blacklist” and add packages that you don’t want automatically updated, you may want to manually update these (and monitor updates).

I prefer not to auto-update critical system apps (I will do this myself).

 

FYI: You can find installed packages by running this command:

 

Enable automatic updates by editing /etc/apt/apt.conf.d/20auto-upgrades

Edit the number at the end (the number is how many days to wait before updating) of each line.

> APT::Periodic::Update-Package-Lists “1”;
> APT::Periodic::Download-Upgradeable-Packages “1”;
> APT::Periodic::AutocleanInterval “7”;
> APT::Periodic::Unattended-Upgrade “1”;

Set to “0” to disable automatic updates.

The results of unattended-upgrades will be logged to /var/log/unattended-upgrades

Update packages now.

 

Almost done.

I Rebooted

GT Metrix Score

I almost fell off my chair. It’s an amazing feeling hitting refresh in GT Metrix and getting sub-2-second score consistently (and that is with 17 assets loading and 361KB of HTML content)

0.9sec load times

WebPageTest.org Test Score

Nice. I am not sure why the effective use of CDN has an X rating as I have the EWWW CDN and Cloudflare. First Byte time is now a respectable “B”, This was always bad.

Update: I found out the longer you set cache delays in Cloudflare the higher the score.

Web Page Test

GT Metrix has a nice historical breakdown of load times (night and day).

Upcloud Site Speed in GTMetrix

Google Page Speed Insight Desktop Score

I benchmarked with https://developers.google.com/speed/pagespeed/insights/

This will help with future SEO rankings. It is well known that Google is pushing fast servers.

100% Desktop page speed score

Google Chrome 70 Dev Console Audit (Desktop)

100% Chrome Audit Score

This is amazing, I never expected to get this high score.  I know Google like (and are pushing) sub-1-second scores.

My site is loading so well it is time I restored some old features that were too slow on other servers

  • I disabled Lazy loading of images (this was not working on some Android devices)
  • I re-added the News Widget and news images.

GTMetrix and WebpageTest sores are still good (even after adding bloat)

Benchmarks are still good

My WordPress site is not really that small either

Large website

FYI: WordPress Plugins I use.

These are the plugins I use.

  • Autoptimize – Optimises your website, concatenating the CSS and JavaScript code, and compressing it.
  • BJ Lazy Load (Now Disabled) – Lazy image loading makes your site load faster and saves bandwidth.
  • Cloudflare – Cloudflare speeds up and protects your WordPress site.
  • Contact Form 7 – Just another contact form plugin. Simple but flexible.
  • Contact Form 7 Honeypot – Add honeypot anti-spam functionality to the popular Contact Form 7 plugin.
  • Crayon Syntax Highlighter – Supports multiple languages, themes, highlighting from a URL, local file or post text.
  • Democracy Poll – Allows to create democratic polls. Visitors can vote for more than one answer & add their own answers.
  • Display Posts Shortcode – Display a listing of posts using the shortcode
  • EWWW Image Optimizer – Reduce file sizes for images within WordPress including NextGEN Gallery and GRAND FlAGallery. Uses jpegtran, optipng/pngout, and gifsicle.
  • GDPR Cookie Consent – A simple way to show that your website complies with the EU Cookie Law / GDPR.
  • GTmetrix for WordPress – GTmetrix can help you develop a faster, more efficient, and all-around improved website experience for your users. Your users will love you for it.
  • TinyMCE Advanced – Enables advanced features and plugins in TinyMCE, the visual editor in WordPress.
  • Wordfence Security – Anti-virus, Firewall and Malware Scan
  • WP Meta SEO – WP Meta SEO is a plugin for WordPress to fill meta for content, images and main SEO info in a single view.
  • WP Performance Score Booster – Speed-up page load times and improve website scores in services like PageSpeed, YSlow, Pingdom and GTmetrix.
  • WP SEO HTML Sitemap – A responsive HTML sitemap that uses all of the settings for your XML sitemap in the WordPress SEO by Yoast Plugin.
  • WP-Optimize – WP-Optimize is WordPress’s #1 most installed optimisation plugin. With it, you can clean up your database easily and safely, without manual queries.
  • WP News and Scrolling Widgets Pro – WP News Pro plugin with six different types of shortcode and seven different types of widgets. Display News posts with various designs.
  • Yoast SEO – The first true all-in-one SEO solution for WordPress, including on-page content analysis, XML sitemaps and much more.
  • YouTube – YouTube Embed and YouTube Gallery WordPress Plugin. Embed a responsive video, YouTube channel, playlist gallery, or live stream

How I use these plugins to speed up my site.

  • I use EWWW Image Optimizer plugin to auto-compress my images and to provide a CDN for media asset deliver (pre-Cloudflare). Learn more about ExactDN and EWWW.io here.
  • I use Autoptimize plugin to optimise HTML/CSS/JS and ensure select assets are on my EWWW CDN. This plugin also removes WordPress Emojis, removed the use of Google Fonts, allows you to define pre-configured domains, Async Javascript-files etc.
  • I use BJ Lazy Load to prevent all images in a post from loading on load (and only as the user scrolls down the page).
  • GTmetrix for WordPress and Cloudflare plugins are for information only?
  • I use WP-Optimize to ensure my database is healthy and to disable comments/trackbacks and pingbacks.

Let’s Test UpCloud’s Disk IO in Chicago

Looks good to me, Read IO is a little bit lower than UpCloud’s Singapore data centre but still, it’s faster than Vultr.  I can’t wait for more data centres to become available around the world.

Why is UpCloud Disk IO so good?

I asked UpCloud on Twitter why the Disk IO was so good.

  • “MaxIOPS is UpCloud’s proprietary block-storage technology. MaxIOPS is physically redundant storage technology where all customer’s data is located in two separate physical devices at all times. UpCloud uses InfiniBand (!) network to connect storage backends to compute nodes, where customers’ cloud servers are running. All disks are enterprise-grade SSD’s. And using separate storage backends, it allows us to live migrate our customers’ cloud servers freely inside our infrastructure between compute nodes – whether it be due to hardware malfunction (compute node) or backend software updates (example CPU vulnerability and immediate patching).“

My Answers to Questions to support

Q1) What’s the difference between backups and snapshots (a Twitter user said Snapshots were a thing)

A1) Backups and snapshots are the same things with our infrastructure.

Q2) What are charges for backup of a 50GB drive?

A2) We charge $0.06 / GB of the disk being captured. But capture the whole disk, not just what was used. So for a 50GB drive, we charge $0.06 * 50 = $3/month. Even if 1GB were only used.

  • Support confirmed that each backup is charged (so 5 times manual backups are charged 5 times). Setting up a daily auto backup schedule for 2 weeks would create 14 billable backup charges.
  • I guess a 25GB server will be $1.50 a month

Q3) What are data charges if I go over my 2TB quota?

A3) Outgoing data charges are $0.056/GB after the pre-configured allowance.

Q4) What happens if my balance hits $0?

A4) You will get notification of low account balance 2 weeks in advance based on your current daily spend. When your balance reaches zero, your servers will be shut down. But they will still be charged for. You can automatically top-up if you want to assign a payment type from your Control Panel. You deposit into your balance when you want. We use a prepay model of payment, so you need to top up before using, not billing you after usage. We give you lots of chances to top-up.

Support Tips

  • One thing to note, when deleting servers (CPU, RAM) instances, you get the option to delete the storages separately via a pop-up window. Choose to delete permanently to delete the disk, to save credit. Any disk storage lying around even unattached to servers will be billed.
  • Charges are in USD.

I think it’s time to delete my domain from Vultr in Sydney.

Deleted my Vultr domain

I deleted my Vultr domain.

Delete Vultr Server

Done.

Check out my new guide on Nixstats for awesome monitoring

What I would like

  1. Ability to name individual manual backups (tag with why I backed up).
  2. Ability to push user defined data from my VM to the dashboard
  3. Cheaper scheduled backups
  4. Sydney data centres (one day)

Update: Post UpCloud Launch Tweaks (Awesome)

I had a look at https://www.webpagetest.org/ results to see where else I can optimise webpage delivery.

Optimisation Options

HTTP2 Push

I added http2 to my listening servers I tested a http2 push page by defining this in /etc/nginx/sites-available/default 

Once I tested that push (demo here) was working I then defined two files to push that were being sent from my server

2FA Authentication at login

I recently checked out YubiCo YubiKeys and I have secured my Linux servers with 2FA prompts at login. Read the guide here. I secured my WordPress aswel.

Performance

I used the WordPress Plugin Autoptimize to remove Google font usage (this removed a number of files being loaded when my page loads).

I used the WordPress Plugin WP-Optimize plugin into to remove comments and disable pingbacks and trackbacks.

Results

Conclusion

I love UpCloud’s fast servers, give them a go (use my link and get $25 free credit).

I love Cloudflare for providing a fast CDN.

I love ewww.io’s automatic Image Compression and Resizing plugin that automatically handles image optimisations and pre Cloudflare/first hit CDN caching.

Read my post about server monitoring with Nixstats here.

Let the results speak for themselves (sub <1 second load times).

More Reading on UpCloud

https://www.upcloud.com/documentation/faq/

UpCloud Server Status

http://status.upcloud.com

I hope this guide helps someone.

Free Credit

Please consider using my referral code and get $25 credit for free.

https://www.upcloud.com/register/?promo=D84793

2020 Update. I have stopped using Putty and WinSCP. I now use MobaXterm (a tabbed SSH client for Windows) as it is way faster than WinSCP and better than Putty. Read my review post of MobaXTerm here.

Ask a question or recommend an article

[contact-form-7 id=”30″ title=”Ask a Question”]

Revision History

v2.2 Converting to Blocks

v2.1 Newer GTMetrix scores

v2.0 New UpCloud UI Update and links to new guides.

v1.9 Spelling and grammar

v1.8 Trial mode gotcha (deposit money ASAP)

v1.7 Added RSA Private key info

v1.7 – Added new firewall rules info.

v1.6 – Added more bloat to the site, still good.

v1.5 Improving Accessibility

v1.4 Added Firewall Price

v1.3 Added wp-config and plugin usage descriptions.

v1.2 Added GTMetrix historical chart.

v1.1 Fixed free typos and added final conclusion images.

v1.0 Added final results

v0.9 added more tweaks (http2 push, removing unwanted files etc)

v0.81 Draft  – Added memory usage chart and added MaxIOPS info from UpCloud.

v0.8 Draft post.

Goodbye Dropbox, One Drive, iCloud and Hello Nextcloud private cloud on UpCloud

by

I recently came across NextCloud Hub server (free on self-hosted servers) and I wanted to set up my own private cloud server to store my own files.

I wan’t to be able to access my files on Windows, Mac, Android and iOS.

Most of all I want a place in the cloud (that I own) that I can upload my Acronis backup of C Drive as the Backblaze client (read my review of Backblaze here) is a bit slow at uploading a 150GB backup file to the USA.

To create my own Nextcloud server I will need to login to these services.

  • I logged into my Domain Name provider porkbun.com (to ensure I had a domain name)
  • I logged into Cloudflare.com (to manage my DNS for a subdomain (redirected from PorkBun)).
  • I logged into my UpCloud.com account. (to deploy a new virtual machine)

Fyi: If you don’t have a favourite virtual machine provider you can use my referral link to obtain $25 free credit (only if you are new to UpCloud). Every new user who signs up with my referral link will receive a $25 bonus to get started. That’s 5 months free server (1 CPU and 1GB memory Linux server) 

Post Index

  1. NextCloud System Requirements
  2. Creating a new Virtual Machine at UpCloud
  3. Updating Ubuntu
  4. Installing Common Software Packages
  5. Securing SSH with the Google Authentication PAM module
  6. Installing a Firewall
  7. Installing NGINX and DNS
  8. Installing PHP/PHP-FPM
  9. Installing MySQL
  10. Nixstats
  11. CronTab Updates
  12. Misc Security Stuff

1. NextCloud System Requirements

I checked the NextCloud version 18  system requirements and it needs the following to deploy.

  • Ubuntu 18.04 LTS (recommended)
  • MySQL 5.7+ or MariaDB 10.2+ (recommended)
  • Nginx with php-fpm
  • PHP 4 (recommended)

Minimum Memory Requirements 

Nextcloud needs a minimum of 128MB RAM, and they recommend a minimum of 512MB.

I can deploy a server with at least 512MB memory free. The minimum UpCloud server I can deploy comes with 1GB of memory for $5 a month.

Time to create a new server.

2. Creating a new Virtual Machine at UpCloud

I logged into UpCloud and  clicked “Deploy Server“

Deploy Server Button

I selected Singapore as the place to deploy my new server (as it was closest to me here in Australia). UpCloud does not have servers here in Australia yet.

I chose to deploy a server in Singapore

I checked https://wondernetwork.com/pings/ to ensure Singapore is the fastest location near.  My server https://fearby.com is located in Chicago as it’s closer to my average readers and search engines.

Ping Speeds

I would like my NextCloud server to be as fast as possible to me. Singapore is the faster UpCloud datacenter near me.

I selected a server with 1 CPU Core, 1GB of Memory, 25GB of storage and 1TB of network traffic. I will add a 500GB drive to this server for additional storage.

If the server needs more resources I will upgrade it later.

Server tier's $5 month to $640 a month

The only downside of a $5/m server is the 1TB network quota. If I overuse the network (downloads) I will get an extra charge. 

I reached out to the support to verify the costs if I go over my quota.

Long answered the question.

My question to UpCloud chat support.

Q1) With a $5/m server with 1TB quota what is the over charge costs if I go over 1TB
Q2) Is 1TB quota up and down or just down?

Prompt Answer

Hi Simon,

Good to speak to you again.

A1) Only Simple plans include monthly allowance of outgoing network traffic. After the allowance, the cost is $0.01/GB. It was a lot higher, but we reduced it to make it more competitive.

A2) The quota is for outgoing network traffic from your servers, all incoming and private traffic between your UpCloud servers is free of charge.
Regards,
~Long Lam

I hope this is helpful, let us know if you have any further questions.

Based on this information if I use all of my 1TB Monthly quota downloading files and I download and extra 150GB (e.g A 150GB Acronis backup image) it will cost $1.5 extra. That’s not bad.

UpCloud Chat Support

Before I selected a server type (Simple or Flexible) or storage type  (MAX IOPS or HDD) I jumped onto the UpCloud chat and asked a few questions.

Q1) Hello, When deploying a server is there a cost difference between MAX IOPS and HDD storage? I am looking at a 500GB drive

A1) Storage (MaxIOPS), per GB $0.00031/ hourly $0.22/ monthly, Storage (HDD), per GB $0.000078/hourly  $0.06 / monthly 

Q2) What’s the difference between Simple and Flexible?

A2) Flexible will/turn out more expensive depending on your use case, generally, it is more suited for short term deployments.

> With our flexible plans, you decide yourself how much CPU, memory and block storage your cloud server is allocated. This gives you incredible flexibility and allows you to fully customise your cloud server according to your specific needs.
 
>Do also note when flexible plans are shutdown we only charge you for allocated storages and IPv4. Whereas in simple plans, it will be charged fully even when shutdown.
 
> Our simple plans are billed by the hour, up to a limit of 672 hours per month. Should you decide to use your fewer hours, you will only be billed for the hours you actually used.
Question 1 to UpCloud chat

UpCloud has very responsive and helpful chat staff.  I never had this level of help with Vultr, Digital Ocean or AWS.

Question 2 to UpCloud

After I chatted with UpCloud support I decided to deploy a simple (Ubuntu 18.04) Server with 1 CPU Core, 1TB network traffic, 1GB of memory, 25GB system drive and an extra 500GB storage device.

When you create a server you can add an extra storage device. Nice.

Add a new device to the main storage device.

When adding an extra storage device you can choose faster MaxIOPS storage or slower HDD based storage. 

I will choose HDD storage as it will be cheaper for a 500GB device.

Second storage MaxIOPS or HDD storage

I created a 500GB storage device for a Nextcloud data drive.

You can create up to 2TB storage devices with UpCloud.

Name of the second storage device

I selected Ubuntu 18.04 LTS as the operating system.

I chose Ubuntu as the operating system

I configured a login method as “Only SSH Keys” as I have already added my SSH key with a passphrase.

Login method SSH Keys only

I selected my SSH key.

If you have not previously added an SSH Key to UpCloud then click Add new. Read more here.

I selected an Initialisation script I previously created (that just outputs a “Hello World” to a text file). One day I will create an Ansible or Terraform script to set up a server.

Select SSH Key and choose an init script

I clicked Deploy

Fyi: If you don’t have a favourite virtual machine provider you can use my referral link to obtain $25 free credit (only if you are new to UpCloud). Every new user who signs up with my referral link will receive a $25 bonus to get started. That’s 5 months free server (1 CPU and 1GB memory Linux server).

I entered my desired hostname 

Deploying a server at UpCloud

I had a notification that the UpCloud Deploy is being deployed..

Deploy Underway

I could see in my UpCloud dashboard that the server was being deployed.

List of all my servers at UpCloud

Server deploy is underway

Wow that took a whole minute to deploy a 525GB Server.

Deploy log said it took 1 minute to deploy

Wow UpCloud are fast

Configuring the server with Putty

Now it is time to connect to the Ubuntu Servers CLI and configure the server.  I grabbed the IP address that was listed at UpCloud.

I opened Putty  and added the IP address for the server.

New Putty connection

Under the Auth section in Putty I added the path to my SSH Private Key (the same one that configured in the new server)

Putty add ppk file

I saved the connection and clicked Open. I clicked Yes to the SSH fingerprint when I verified it was correct.

SSH Connect Verity

I now had root access to my new server.

Default login

Time to update Ubuntu.

3. Updating Ubuntu

I ran this command to update Ubuntu.

sudo apt-get update && sudo apt-get upgrade

Confirming the 2x storage disks

I ran this command to verify I had the 2 storage devices I selected at server deploy.

sudo lsblk |grep disk
vda    252:0    0   25G  0 disk
vdb    252:16   0  500G  0 disk

Yes, I have a 25GB disk and a 500GB disk

4. Installing Common Software Packages

I installed these packages

sudo apt-get install htop
sudo apt-get install lshw
sudo apt-get install ufw
sudo apt-get install ncdu
sudo apt-get install nmap
sudo apt-get install iozone3
sudo apt install pydf
sudo apt install mc
sudo apt install nnn

5. Securing SSH with the Google Authentication PAM module

Before I carry on any further I need to enable hardware 2FA login protections to all SSH logins. I will follow the guide I created here (Setup two factor authenticator protection at login on Ubuntu or Debian).

Warning: Take a backup of your server first. If you set this up wrong say bye-bye to your server. If I lose my YubiCo YubiKey and forget my backup codes I will have a hard time getting back in.

I will force all SSH logins to require my Hardware YubiCo YubiKey to be inserted (to generate a temporary One Time Password (OTP)).

You don’t need a YubiCo YubiKey, a generic software authentication app is OK but I prefer hardware devices as they are more secure.

YubiKey In USB Port Photo

I set the timezone to match Australia/Sydney. If I enabled a 2FA (OTP) at login with a different timezone than my connecting machine I would never be able to login to my server as my server and local PC need to be in the same timezone.

I ran this command to set the time in Ubuntu.

pkg-reconfigure tzdata

I then checked the time

sudo hwclock --show
2020-05-31 23:17:02.873751+1000

I installed the Google Authentication PAM Module (read more)

sudo apt install libpam-google-authenticator

I ran this command to configure the Google PAM Module

google-authenticator

I was presented with these questions

Do you want authentication tokens to be time-based (y/n) y

I was presented with a secret key, verification code and backup codes (I saved these somewhere safe)

Do you want me to update your “/root/.google_authenticator” file? (y/n) y

Do you want to disallow multiple uses of the same authentication
token? This restricts you to one login about every 30s, but it increases
your chances to notice or even prevent man-in-the-middle attacks (y/n) y

By default, a new token is generated every 30 seconds by the mobile app.
In order to compensate for possible time-skew between the client and the server, we allow an extra token before and after the current time. This allows for a time skew of up to 30 seconds between authentication server and client. If you experience problems with poor time synchronization, you can increase the window from its default size of 3 permitted codes (one previous code, the current code, the next code) to 17 permitted codes (the 8 previous codes, the current
code, and the 8 next codes). This will permit for a time skew of up to 4 minutes between client and server.

Do you want to do so? (y/n) y

If the computer that you are logging into isn’t hardened against brute-force
login attempts, you can enable rate-limiting for the authentication module.
By default, this limits attackers to no more than 3 login attempts every 30s.

Do you want to enable rate-limiting? (y/n) y

I can review all config values later with this command

sudo nano ~/.google_authenticator

Now I will enable 2FA at login by editing this file

sudo nano /etc/pam.d/sshd

I searched for “@include common-auth” then added this line after it.

auth required pam_google_authenticator.so

I then comment out the following line (this is the most important step, this forces 2FA)

#@include common-auth

Picture of my /etc/pam.d/sshd changes

pam chnages

I saved the file /etc/pam.d/sshd 

Now I can enable the PAM Module by editing this file

sudo nano /etc/ssh/sshd_config

I searched for

ChallengeResponseAuthentication

And change the value to “yes”

I ensured the following line exists

UsePAM yes

I added this line then saved /etc/ssh/sshd_config

AuthenticationMethods publickey,password publickey,keyboard-interactive

Now I edited /etc/pam.d/common-auth

sudo nano /etc/pam.d/common-auth

I added the following line before the line that says “auth [success=1 default=ignore] pam_unix.so nullok_secure”

auth required pam_google_authenticator.so

Now I can restart the SSH Service and test the 

/etc/init.d/ssh restart
[ ok ] Restarting ssh (via systemctl): ssh.service.

I restarted my putty session and reconnected to my server and I was prompted for the password for my private key and the randomly generated one-time password that was linked to my YubiCo YubiKey. Nice

Now I need to whitelist my SSH port to select IP’s.

6. Installing a Firewall

I installed the UFW firewall by typing this command

sudo apt-get install ufw

I configured UFW to rate limit SSH logins by typing this command

sudo ufw limit ssh comment 'Rate limit hit for openssh server'
Rules updated
Rules updated (v6)

I configured some common ports

sudo ufw allow ssh/tcp
sudo ufw logging on
sudo ufw allow http
sudo ufw allow https
sudo ufw allow 22
sudo ufw allow 53
sudo ufw allow 80
sudo ufw allow 443
sudo ufw allow 873

I added Cloudflare firewall rules (as my domain is behind their firewall and I will remove all direct IP access to my server later)

sudo ufw allow from 173.245.48.0/20
sudo ufw allow from 103.21.244.0/22
sudo ufw allow from 103.22.200.0/22
sudo ufw allow from 103.31.4.0/22
sudo ufw allow from 141.101.64.0/18
sudo ufw allow from 108.162.192.0/18
sudo ufw allow from 190.93.240.0/20
sudo ufw allow from 188.114.96.0/20
sudo ufw allow from 197.234.240.0/22
sudo ufw allow from 198.41.128.0/17
sudo ufw allow from 162.158.0.0/15
sudo ufw allow from 104.16.0.0/12
sudo ufw allow from 172.64.0.0/13
sudo ufw allow from 2400:cb00::/32
sudo ufw allow from 2405:8100::/32
sudo ufw allow from 2405:b500::/32
sudo ufw allow from 2606:4700::/32
sudo ufw allow from 2803:f800::/32
sudo ufw allow from 2c0f:f248::/32
sudo ufw allow from 2a06:98c0::/29

I added appropriate Whitelisted IP’s that can connect to Port 22 (SSH), removed blanket port 22 access and I configured my firewall to allow 91 incoming and outgoing rules (this is a secret)

I reloaded and enabled the firewall.

sudo ufw reload
sudo ufw disable
sudo ufw enable

7. Installing NGINX and DNS

I update Ubuntu again

sudo apt-get update && sudo apt-get upgrade

I installed Nginx

sudo apt-get install nginx

I edited my NGINX config and I change the default www folder location. 

I also configured the log file location, mime types, max body size, gzip, default ports, ssl cert paths, security headers, default page, server name, sensitive file block rules, dns server, cache headers etc.

Read more to here to configure Nginx etc.

Fyi: Nginx config file locations

sudo nano /etc/nginx/nginx.conf
sudo nano /etc/nginx/sites-available/default

I typed my servers IP address into a web browser

Nginx installed

I created an index.html file in the www folder and added “Hello World” to the file.

If I type my server’s IP address into a browser I can see this file.

My DNS is with Cloud flare so I logged in and added 2 DNS entries (IPv4 and IPv6) that direct traffic my new server IP(s) for this subdomain. To obtain the IP addresses I logged into UpCloud and clicked my server then clicked Network and noted my IPv4 and IPv6 addresses.

I then went to Cloudflare and added a DNS record for IPv4 and IPv6 pointing to my servers IP(s). I enabled Cloudflare Proxying to allow Cloud flare to try and hide the IP of the server.  I then configured my firewall to block access to the IP except via Cloudflare and my whitelist.

I then checked for worldwide DNS propagation with https://www.whatsmydns.net/. After 3 minutes my DNS changes were all around the world. Thanks, Cloudflare.

I tried loading my site but CLiudflare said it was down.

Site wont load.

I created a new HTTPS certificate at Cloud flare just to be sure and added it to my sites.

Generated new SSL cert

After investigating further I found this was because my primary website has a “Strict-Transport-Security header and I had enabled Full (Strict) SSL/TLS Encryption. I changed this to Full at Cloudflare.

Cloudflare HTTPS section

My site was now working.

SIte works

8. Installing PHP/PHP-FPM

To Install PHP 7.4 I ran this command to be able to get the latest version of PHP

sudo apt-get update
sudo apt -y install software-properties-common
sudo add-apt-repository ppa:ondrej/php
sudo apt-get update

I installed PHP 7.4 with this command

sudo apt -y install php7.4

I checked that PHP is installed by running 

php -v
PHP 7.4.6 (cli) (built: May 14 2020 10:02:44) ( NTS )
Copyright (c) The PHP Group
Zend Engine v3.4.0, Copyright (c) Zend Technologies
    with Zend OPcache v7.4.6, Copyright (c), by Zend Technologies

I setup some PHP Modules

sudo apt install php7.4-common php7.4-mysql php7.4-xml php7.4-xmlrpc php7.4-curl php7.4-gd php7.4-imagick php7.4-cli php7.4-dev php7.4-imap php7.4-mbstring php7.4-soap php7.4-zip php7.4-bcmath php7.4-tidy

I noticed apache2 installed (and broke my Nginx)  so I uninstalled it.

 sudo apt-get remove apache2

I also blocked apache from installing again

apt-mark hold apache2
apache2 set on hold.

I checked to make sure Apache was blocked from installing

apt-mark hold apache*

apache2 was already set on hold.
apache2-bin set on hold.
apache2-utils set on hold.
apache2-data set on hold.
apache2-doc set on hold.
apache2-suexec-pristine set on hold.
apache2-suexec-custom set on hold.
apache2-dbg set on hold.
apache2-dev set on hold.
apache2-ssl-dev set on hold.
apachedex set on hold.
apacheds set on hold.
apachetop set on hold.

Now I will install PHP-FPM.

FPM is a process manager to manage FastCGI in PHP

sudo apt-get install php7.4-fpm

I checked the status of the PHP FPM service with

sudo service php7.4-fpm status

Output

php7.4-fpm.service - The PHP 7.4 FastCGI Process Manager
   Loaded: loaded (/lib/systemd/system/php7.4-fpm.service; enabled; vendor preset: enabled)
   Active: active (running) since Sat 2020-06-06 21:34:31 AEST; 1min 54s ago
     Docs: man:php-fpm7.4(8)
  Process: 7767 ExecStopPost=/usr/lib/php/php-fpm-socket-helper remove /run/php/php-fpm.sock /etc/php/7.4/fpm/pool.d/www.conf 74 (code=exited, status=0/SUCCESS)
  Process: 7772 ExecStartPost=/usr/lib/php/php-fpm-socket-helper install /run/php/php-fpm.sock /etc/php/7.4/fpm/pool.d/www.conf 74 (code=exited, status=0/SUCCESS)
 Main PID: 7769 (php-fpm7.4)
   Status: "Processes active: 0, idle: 2, Requests: 0, slow: 0, Traffic: 0req/sec"
    Tasks: 3 (limit: 1147)
   CGroup: /system.slice/php7.4-fpm.service
           |-7769 php-fpm: master process (/etc/php/7.4/fpm/php-fpm.conf)
           |-7770 php-fpm: pool www
           `-7771 php-fpm: pool www

I might add some PHP child workers if I add more CPU’s to this server later

I edited my php.ini

sudo nano /etc/php/7.4/fpm/php.ini

I made these changes to php.ini

file_uploads = On
allow_url_fopen = On
memory_limit = 512M
post_max_size = 50M
upload_max_filesize = 50M
cgi.fix_pathinfo = 0
max_execution_time = 360
date.timezone = Australia/Sydney

I added read this page (Nginx Configuration) and edited my /etc/nginx/sites-enabled/default

I tested and reloaded the Nginx config and restarted NGINX and PHP

nginx -t
nginx -s reload

sudo systemctl restart nginx.service
sudo systemctl restart php7.4-fpm

sudo systemctl status nginx.service
sudo systemctl status php7.4-fpm

To test PHP FPM I created a php file in my website root and added the following text

<?php phpinfo( ); ?>

I loaded this file in a browser and I confirmed that PHP-FPM was installed.

The test was ok (I deleted this test file), I deleted the index.html and created an index.php file

PHP-FPM test ok

9. Installing MySQL

To install MySQL I ran the following command

fyi: All usernames and database names are for example only.

sudo apt install mysql-server

I configured MySQL With this command

sudo mysql_secure_installation
Securing the MySQL server deployment.

Connecting to MySQL using a blank password.

...
Would you like to setup VALIDATE PASSWORD plugin?
y


There are three levels of password validation policy:
STRONG

Please set the password for root here.
New password:
**************************************************

Re-enter new password:
**************************************************

Estimated strength of the password: 100

Do you wish to continue with the password provided?
y


Remove anonymous users?
y

Disallow root login remotely?
y

Remove test database and access to it?
y

Reload privilege tables now?
y

Now to test MySQL I will login to it

sudo mysql -u root -p
************************************************************

Now I ran the following to create a database for Nextcloud

mysql> CREATE DATABASE databasename CHARACTER SET utf8mb4 COLLATE utf8mb4_general_ci;
Query OK, 1 row affected (0.00 sec)

I verified the database was created

mysql> SHOW DATABASES;
+--------------------+
| Database           |
+--------------------+
| information_schema |
| mysql              |
| databasename       |
| performance_schema |
| sys                |
+--------------------+
5 rows in set (0.00 sec)

I created a database user 

mysql> CREATE USER 'username'@'localhost' IDENTIFIED BY '************************************';
Query OK, 0 rows affected (0.00 sec)

I verified the use was created with this command

mysql> SELECT User,Host FROM mysql.user;
+------------------+-----------+
| User             | Host      |
+------------------+-----------+
| **************** | localhost |
| **************** | localhost |
| **************** | localhost |
| username         | localhost |
| **************** | localhost |
+------------------+-----------+
5 rows in set (0.00 sec)

I set permissions to add the user to the database

mysql> GRANT ALL PRIVILEGES ON `databasename`.* TO 'username'@'localhost';
Query OK, 0 rows affected (0.00 sec)

I verified the permissions with this command

mysql> SHOW GRANTS FOR 'username'@'localhost';
+--------------------------------------------------------------------------+
| Grants for username@localhost                                      |
+--------------------------------------------------------------------------+
| GRANT USAGE ON *.* TO 'username'@'localhost'                       |
| GRANT ALL PRIVILEGES ON `databasename`.* TO 'username'@'localhost' |
+--------------------------------------------------------------------------+
2 rows in set (0.00 sec)

Finally I flushed permissions

mysql> FLUSH PRIVILEGES;

Now the databases is ready for Nextcloud

10. Nixstats

If you do not know what Nixstat’s is check out my post here Monitor server performance with NixStats and receive alerts by SMS, Push, Email, Telegram etc

I logged into Nixstats and click Add Server. I ran the provided install command.

wget -q -N --no-check-certificate https://nixstats.com/nixstatsagent.sh && bash nixstatsagent.sh ################## ##########################

Todo: Configure Nixstats PHP-FPM and NGINX Reporting (work in progress). My firewall rules are too tight for this install.

Handy Links

11. CronTab Updates

I created a update.sh file that I can call from a crontab entry to update Ubuntu and other software every xx hours.

I added this to my crontab.

12. Misc Security Stuff

I made sure my firewall only allowed traffic to my server was from Cloudflare IP’s and Whitelisted IP’s

Cloud flare IP’s can be found here.

https://www.cloudflare.com/ips-v4/
https://www.cloudflare.com/ips-v6/

At the time of writing the IP’s are 

173.245.48.0/20
103.21.244.0/22
103.22.200.0/22
103.31.4.0/22
141.101.64.0/18
108.162.192.0/18
190.93.240.0/20
188.114.96.0/20
197.234.240.0/22
198.41.128.0/17
162.158.0.0/15
104.16.0.0/12
172.64.0.0/13
131.0.72.0/22
2400:cb00::/32
2606:4700::/32
2803:f800::/32
2405:b500::/32
2405:8100::/32
2a06:98c0::/29
2c0f:f248::/32

I blocked access to my webserver (port 80 and 443) to anyone but Cloudflare.

I whitelisted DNS traffic to only Up Cloud. Thanks, Lon.

Up Cloud support is awesome.

UpCloud Support

Installing NextCloud

Finally I can Install Nextcloud, I navigated to https://nextcloud.com/install/ and clicked Download for Server

Download Nextcloud

I will use the Web installer to Install Nextcloud.

Web Installer Tab

Nextcloud web installer instructions

Setup Instructions

Snip about the Nextcloud Installer from the download page

The Web Installer is the easiest way to install Nextcloud on a web space. It checks the dependencies, downloads Nextcloud from the official server, unpacks it with the right permissions and the right user account. Finally, you will be redirected to the Nextcloud installer.

1) Right-click here and save the file to your computer
2) Upload setup-nextcloud.php to your web space
3) Point your web browser to setup-nextcloud.php on your webspace
4) Follow the instructions and configure Nextcloud
5) Login to your newly created Nextcloud instance!

You can find further instructions in the Nextcloud Admin Manual.

Note that the installer uses the same Nextcloud version as available for the built in updater in Nextcloud. After a major release it can take up to a month before it becomes available through the web installer and the updater. This is done to spread the deployment of new major releases out over time.

I used WinSCP to upload the setup-nextcloud.php to my Nginx web root  folder

WinSCP uploading

I loaded the setup-nextcloud.php file from, my web browser.

Loading setup-nextcloud.php

I entered “.” to install Nextcloud to the website root.

Install Next cloud to .

There is no way Nextcloud installed in 2 seconds, I checked the size of the disk usage in my website root.

sudo du -hs /web-root
313M

Nextcloud took about 10 seconds to download 313MB onto my UpCloud Server.

Fyi: I installed the SpeedTest CLI app and ran a benchmark and UpCloud Chicago can download as 937Mbps/sec and UpCloud Singapore can download at 717Mbps/sec. 

Nextcloud is installed.

Now I need to enter the data root folder for Nextcloud . I installed lswh to be able to see my 500GB disk.

sudo apt-get install lshw

I ran the following to see my disks

sudo lshw -class disk -short
H/W path        Device     Class      Description
=================================================
**********      /dev/vda   disk       26GB Virtual I/O device
**********      /dev/vdb   disk       536GB Virtual I/O device

I formatted my disk

sudo mkfs.ext4 /dev/vdb

I created a new folder under mount to connect to the partition. The folder name is a made-up sample

sudo mkdir -p /mnt/foldername

I mounted the partition to the folder

sudo mount /dev/vdb /mnt/foldername

I made sure Nginx can access the folder

sudo chown -R www-data:www-data /mnt/foldername

I changed to the partition mount

cd /mnt/foldername

I created a test 490GB file

fallocate -l 490G test.file

I checked the file

ls -al
-rw-r--r-- 1 username useername     526133493760 Jun  9 19:38 test.file

I deleted this test file and set this mount point as the data file in Nextcloud setup.

I added a new Nextcloud admin username and password,  mount folder for Nextcloud data folder, the SQL database user/password/database name and host and clicked Finish Setup

Nextcloud details

Nextcloud was setup.

Misc Setup

I ran the /settings/admin/overview report to see if I needed to perform andy final setup steps. I have a few missing php modules and a few optimisation tasks that need resolving.

Links to resolve.

Nextcloud External Security Scan

I loaded https://scan.nextcloud.com/ to perform a external security scan.

Security Scan

Scan Results

All good so far.

Adding Two-Factor Authentication (YubiKeys)

I noticed in the Nextcloud security setting page I can setup a YubiKey as a pass-wordless  login device.

Web AuthN device

This would allow me to insert my YubiKey to login automatically

Auto login.

I added my YubiKey and gave it a name.

Name a YubiKey

The password-less login method is a bit insecure as anyone that has my YubiKey can access my site.

I think I will set up a Two-Factor Authentication/OTP login method and link that to my YubiKey.  I visited the /settings/apps/security page and installed the Two-Factor TOTP Provider app.

Install the OTP App
Install; the OTL app

I clicked the checkbox next to TOTP

Enable TOPT

The app generated a QR code that my YubiCo Authentication App can use to link to Nectcloud

I verified the QR scan and entered the 6 number verification code from my YubiCo Authenticator app

Scan the QR Code

Two Factor logins are now enabled.

2FA Enabled/

Now after I log in I have to enter a temporary 6 digit number that is only valid for 30 seconds (and only after entering my YubiCo YubiKey into my PC and entering its password)

2FA enabled at login/

Nice

Nextcloud Overview

I logged into Nextcloud and was greeted with a wizard.

Welcome screen

The sample images in the welcome screen are a bit small.

welcome screen summary

I can add native apps to Windows, Mac, iOS and Android or I can log in via the web page.

App downalod options

Pointers to the manual, community help and forums.

Help options

Main screen is clean.

Main Screen

A user context Menu is linked in the top right.

Drop down menu.

I setup email alerts (I allowed outgoing ports in my firewall)

sudo ufw allow out 465/tcp
sudo ufw allow out 465/udb

I used my GSuite account to send emails.

email settings

Syncing Files from my PC to Nextcloud

I tried uploading my 150GB Acronis Backup image file to Nextcloud by the web interface but this will fail for sure, this will take many hours.

Acronis image uploading.

I decided to configure Acronis True Image to split backups into 100MB chunks.

100GB file sizes

I created another Acronis image of my Windows Drive.

Nextcloud Windows App

I visited https://nextcloud.com/install/ and installed the Nextcloud Windows app to sync files.

Download windows app

I clicked Windows

Windows Download

Click Next

Click Next

Click Next

Click Next

Click Install

Click Install

Nextcloud sync app is now installing

Installing Wizard

Next cloud sync is now installed.

Run Nextcloud

Click Log in

Login Screen

Enter your Nextcloud server https address and click Next

Enter https server

A web browser login screen appeared and I logged in 

Login to the web app.

After I logged in Nextcloud sync was connected

Sync Connected

I was prompted to sync everything online to my local PC or choose folders to Sync .

Sync File dialog.

All files that were in Nextcloud synced down (that I selected)

Nextcloud sync

I set Nextcloud to start at Windows start.

Start at startup.

I reviewed Download and Upload limits

I decided to add my U:\AcronisBackup folder to my Nextcloud server.

U:\AcronisBackup added rto sync

I was asked to add this to a remote Nextcloud folder.

add to destination folder dialog

Files were backing up.

I has 150GB of Acronis backup files backing up.

I could see each 100MB section of the Acronis Backup appearing in the Nextcloud web app.

Nextcloud Web site

I noticed that the raw file system list of files was about 30 seconds ahead of the web list.

ls -al list of the file system

I had an Alert from my Acronis Backup software that new backup files were downloading.

The Acronis backup folder started backing up but I noticed it was redownloading to a new folder.  I don’t want this.

I allowed Nextcloud to access backup files

I paused the Nextloud Sync and my 150GB Backup was re-downloading to a new folder.

pause backup

It looks like U:\AcronisBackup was backing up then downloading to U:\Nextcloud\Simon\AcronisBackup.

File dialog

I moved my Acronis backup from U:\AcronisBackup to U:\Nextcloud\Simon\ZENigma (ZENnigma is the name of my PC)

I moved my 150GB backup files into Nextcloud folder/

I deleted the old sync of U:\AcronisBackup and started the Nextcloud Sync again

Sync restarted

Now my Acronis backup (150GB) was backing up to Nextcloud.

Backup working

It took 24 hours to backup 150GB from my PC to my server in Singapore.

I can see a handy summary of synced files and disk space used/free.

Done

I can control the sync with a System Tray App.

Sys Tray APp

Nextcloud Conclusion

Pros

  • Free
  • Works well.
  • I have an offsite location for backups and an area for file sharing with my family
  • Faster than Backblaze and Dropbox

Cons

  • Needs better Hardware 2FA support
  • Some Nextcloud web pages are not mobile-friendly (e.g add new user)
  • Needs better post install security checks
  • Web view of files could be updated more often, there is as 30-second delay between the web list of files and a CLI list in Putty of /mnt/foldername/username/files/

Troubleshooting

NGINX website is not loading

Check to see if a package has downloaded apache (this will take out Nginx).

Also, make sure you have set permissions on the folder that holds your SSL Certificates and allow your Nginx www-data user read access.

sudo chown -R www-data:www-data /etc/nginx/https-cert/

Deleting a MySQL Database

I had an issue where Nextcloud did not like the database I created so I ran the following to revoke the database users permissions, remove the user and I deleted the database.

Command to revoke the users MySQL permissions

sudo mysql -u root -p
*************************************
mysql> REVOKE ALL PRIVILEGES, GRANT OPTION FROM 'databaseusername'@'localhost';

Delete the MySQL user

sudo mysql -u root -p
Enter password: *************************************
mysql> DROP USER 'databaseusername'@'localhost';

I reset flushed permissions

sudo mysql -u root -p
Enter password: *************************************
mysql> 
FLUSH PRIVILEGES;

To delete the database run the following.

mysqladmin -u root -p drop databasename
Enter password: *************************************
Dropping the database is potentially a very bad thing to do.
Any data stored in the database will be destroyed.

Do you really want to drop the 'databasename' database [y/N] y
Database "databasename" dropped

Thanks for Reading

Fyi: If you don’t have a favourite virtual machine provider you can use my referral link to obtain $25 free credit (only if you are new to UpCloud). Every new user who signs up with my referral link will receive a $25 bonus to get started. That’s 5 months free server (1 CPU and 1GB memory Linux server) 

v1.1

Connecting to a server via SSH with Putty

by

This post aims to show how you can connect to a remote VM server using Telnet/SSH Secure shell with a free program called Putty on Windows. This not an advanced guide, I hope you find it useful.

2020 Update. I have stopped using Putty and WinSCP. I now use MobaXterm (a tabbed SSH client for Windows) as it is way faster than WinSCP and better than Putty. Read my review post of MobaXTerm here.

You will learn how to connect (via Windows) to a remote computer (Linux) over the Telnet protocol using SSH (Secure Shell). Once you login you can remotely edit web pages, learn to code, install programs or do just about anything.

Common Terms (Glossary)

  • Putty: Putty is a free program that allows you to connect to a server via Telnet. Putty can be downloaded from here.
  • Port: A port is a number given to a virtual lane on the internet (a port is similar to a frequency in radio waves but all ports share the same transport layer frequency on the internet). Older unencrypted webpages work on Port (lane 80), older mail worked on Port 25, encrypted web pages work on Port 443. Telnet (that SSH Secure Shell uses) used Port 22. Read about port numbers here.
  • SSH: SSH is a standard that allows you to securely connect to a server over the telnet protocol. Read more here.
  • Shell: Shell or Unix Shell is the name given to the interactive command line interface to Linux. Read more about the shell here.
  • Telnet: Telnet is a standard on the TCP/IP protocol that allows two-way communication between computers (all communicatin issent as characters and not graphics). Read more on telnet here and read about the TCP protocols here and here.
  • VM: VM stands for Virtual Machine and is a name given to a server you can buy (but it is owned by someone else). Read more here.

Read about other common glossary terms used on the Inetre here:
https://en.wikipedia.org/wiki/Glossary_of_Internet-related_terms

Background

If you want a webpage on the internet (or just a server to learn how to program) it’s easier to rent a VM for a few dollars a month and manage it yourself (with Telnet/SSH Secure Shell) than it is to buy a $5,000 server, place it in a data centre and pay for electricity and drive in every few days and update it. Remote management of VM servers via SSH/Secure Shell is the way for small to medium solutions.

  • A simple web hosting site may cost < $5 a month but is very limited.
  • A self-managed VM costs about $5 a month
  • A website service like Wix, Squarespace, Shopify or WordPress will cost about $30~99 a month.
  • A self-owned server will cost hundreds to thousands upfront.

There are pros and cons to all solutions above (e.g cost, security, scalability, performance, risk) but these are outside this post’s topic. I have deployed VMs on provides like AWS, Digital Ocean, Vultr and UpCloud for years. If you need to buy a VM you can use this link and get $25 free credit.

I used to use the OSX Operating System on Apple computers. I was used to using the VSSH software program to connect to servers deployed on UpCloud (using this method). With the demise of my old Apple Mac book (due to heat) I have moved back to using Windows (I am never using Apple hardware again until they solve the heat issues).

Also, I prefer to use Linux servers in the cloud (over say Windows) because I believe they are cheaper, faster and more secure.

Enough talking lets configure a connection.

Public and Private Keys?

Whenever you want to connect to a remote server via Telnet/SSH Secure Shell you will need a public and private key to encrypt communications between you and the remote server.

The public key is configured on your server (on Linux you add the public key to this file ~/.ssh/authorized_keys).

The private key is used by programs (usually on your local computer) to connect to the remote server.


How to create a Public and Private Key on Linux

I usually run this command on Ubuntu or Debian Linux to generate a public and private SSH key. 

sudo ssh-keygen -t rsa -b 4096

The key below was generated for this post and is not used online. Keys are like physical keys, people who have them and know where to use them can use them.

Output:

Generating public/private rsa key pair.
Enter file in which to save the key (/username/.ssh/id_rsa): ./server
Enter passphrase (empty for no passphrase): ********
Enter same passphrase again: ********
Your identification has been saved in ./server.
Your public key has been saved in ./server.pub.
The key fingerprint is:
SHA256:sxfcyn4oHQ1ugAdIEGwetd5YhxB8wsVFxANRaBUpJF4 username@server
The key's randomart image is:
+---[RSA 4096]----+
| .oB**E@Bo       |
|  +.==B.+        |
| o .o+o+..       |
|  .. +..o...     |
|    o ..Sooo.    |
|         ++o.    |
|        .o+o     |
|        .oo .    |
|         ...     |
+----[SHA256]-----+

The two files were created

server
server.pub
  • “server” is the private key
  • “server.pub“is the public key

Public/Private Key Contents

Public Key Contents (“server.pub”)

ssh-rsa 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 username@servercom

Private Key Contents (“server”), always keep the private key safe and never publish it.

-----BEGIN RSA PRIVATE KEY-----
Proc-Type: 4,ENCRYPTED
DEK-Info: AES-128-CBC,D34670C40CE3778974BEF97094010597
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2IjdbfiFHEDOrakp5oeVf8BbLK7RB8OlxgJAS47Byh8j97U7f13A5ZYlK3bkZ7E4
h7mCJQozgWP81ut0d9WUlcKp5M8yg2ctZ7h4oeG4Js4ceHqd19Z4P+1xWKwXcdmV
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cKi6eGlOkcHdKNRtiu7/IZqni85fC8PAwPZ93SICdiq6BpGaGWFh046weIJuflSK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-----END RSA PRIVATE KEY-----

The Public and Private keys is used to encrypt all Telnet/SSH connections and traffic to your server. Keep these key’s private.

fyi: Putty can create SSH Keys too

If you do not have a Linux computer or Linux server to generate keys the Putty generator can create keys too.

Puttygen generating a key based on the randomness of mouse movements.

I did not know Putty can create keys.

Do save the public and private key(s) that were generated in Puttygen (tip: PPK files are what we are after along with the public key later in this post).

Public keys are added to your server when you deploy them. On Linux, you can add new Pulic keys after deployment by adding them to this file “~/.ssh/authorized_keys” to allow people to log in.

Puttygen does format the keys differently than how Ubuntu generates them. Read more here. I’ll keep generating keys in Linux over Puttygen.

Output of the public and PPK files from Puttygen

Putty SSH Client on Windows

Putty is a free windows program that you can use to connect to serves via SSH. Download and install the Putty program.

Open Putty

Putty Icon

Default Putty User Interface.

Screenshot of the Putty Program

To create a connection add an exiting IP address (server name) and SSH port (22) to Putty.

Screenshot of an IP and port entered into putty

In Putty (note the tree view to the left of the image), You can set the auto login name to use to log into the remote server under the Connection the Data in the tree view item

Screenshot showing the SSH usename being added to putty under Connection then Data menu,

You can also set the username under the Connection then Rlogin section of Putty.

Set the usernmae undser rlogin area of putty

OK, lets add the private SSH Key to Putty.

Putty Screehshot showing no support for standard SSH keys (only PPK files)

It looks like Putty only supports PPK private key files not ones generated by Linux. I used to be able to use the private key in the VSSH program on OSX and add the private key to connect to the server over SSH. Putty does not allow you to use Linux generated Private keys directly.

Convert your (Linux generated) private key to (Putty) PPK format with Puttygen

Putty comes with a Key Generator/Converter, you can open your existing RSA private key and convert it (or generate a new one).

TIP: If you generate a key in Puttygen don;t forget to ad’d it to your authorized host file in your remote server.

Open Puttygen

Puttygen icon

Click Conversions than Import Key and choose the private key you generated in Linux

Screenshot showing import RSA key to convert

The private key will be opened

Screenshot of imported RSA key

You can then save the private key as a PPK file.

Save the private key as a PPK file
“server.ppk” Key contents (sample key) 
PuTTY-User-Key-File-2: ssh-rsa
Encryption: aes256-cbc
Comment: imported-openssh-key
Public-Lines: 12
AAAAB3NzaC1yc2EAAAADAQABAAACAQC7Xo9bOCXJ7gVjP8tKOxHVId3KTo5I0VRU
/kSRK3+mGd5VbDbQABo3tdWzYhzkjODzRS9TeL2dcLAQNNQKshi9IW5IGDS1NocS
CLFQId5BFr9s3E79fkWqcZkKmwocepXOOZ91EDKgIFxviOzZKe99sdxxMoZzi1nx
gVyXl4TnaelyiQxeKYniVs1iqDfYWQCxkKsmYit8TvGtOwrhLvKNh9362/y5ebpX
VdFlRuB83eF7k8RHNYCQyOJJVx4cwnTIsAN0GMOwjuaOZbp7rR1d6k7RZmaApNRT
baWOXy32UiBST5TV/jXF2UL/4IBnn+yvCrM0v79e/3omgjlVVKfWByFzMv/YlBKC
AX3xxtJQ9RkzTqseKupXmmJU0rik6Xuz31N2oyw4M7yJofSUGVCN0pnpKEvnKxqo
lfD9egdQy2XDaNioY7cvOO1qRegCKE0sDh1m5MzJWMhbDs7macSMyd6+0O5qWc/B
yHy0G/mVbd8kO4jIuEzEs4IFkPCToEZp7KfkY7KRkOhccLbQ4ApCesUfBtGGAN1f
33NnXCHae3Cx46nSd23fvgDZUVnjI47tNJH5Z8FNVlW/fp5Rgeu/aPUephnDX2IB
xwIKQOmSTDY+nxU4V+c93H1gSOJfvqYbVKIAXKyN9Yh6LC44ZvLrL4q0TC0QlH2+
kxMLnuj7zw==
Private-Lines: 28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Private-MAC: 12298fa865ac574da81898252e83b812200cba59

Now the PPK key can be added to Putty for any server connection that uses the public key. Use the right key for the right server though.

Add the private key to a Putty server by clicking Connection, SSH, AUTH section and browing to the PPK file.

Screenshot showing the PPK key file added to Putty

Now we need to save the connection, click back on the Session note at the top of the treeview, type a server name and click Save

Save Putty connection.

Connecting to your sever via Telnet/SSH wiht Putty.

Once you have added a server name, port, usernames and private key to Putty you can double click the server list item to connect to your server.

You will see a message about accepting the public key from the server. Click Yes. This fingerprint will be the same fingerprint that was shown when you generated the keys (if not maybe someone is hacking in the middle of your local computer and server)

Putty messgae box asking to to remember the public key

Hopefully, you will now have full access to your server with the account you logged in with.

Screenshot of an Ubuntu screen after login

Happy Coding.

Alternatives to self-managed VM’s

I will always run self-managed server (and configure it myself) as its the most economical way to build a fast and secure server in my humble opinion.

I have blogged about alternatives but these solutions always sacrifice something and costs are usually higher and performance can be slower.

I am also lucky enough I can do this as a hobby and its not my day job. when you self manage a VM you will have endless tasks or securing your server and tweaking but its fun.

More Reading

Read some useful Linux commands here and read my past guides here. If you want to buy a domain name click here.

If you are bored and want to learn more about SSH Secure shell read this.

Related Blog Posts

Version: 1.1 Added MobaXterm link

Set up a whitelisted IP on an UpCloud VM and WordPress using a VPN to get a static IP address

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This is how I set up a whitelisted IP on an UpCloud VM and WordPress using a VPN to get a static IP address

If you have not read my previous posts I have now moved my blog to the awesome UpCloud host (signup using this link to get $25 free UpCloud VM credit). I compared Digital Ocean, Vultr and UpCloud Disk IO here and UpCloud came out on top by a long way (read the blog post here). Here is my blog post on moving from Vultr to UpCloud.

Buy a domain name from Namecheap here.

Domain names for just 88 cents!

Before you begin

Take a backup of WordPress files + database and take a snapshot of your VM (see my UpCloud VM guide here).

Having a ready backup IS a good idea.

Screenshot of https://my.upcloud.com/server/details/

Why Whitelist

Whitelisting is not bulletproof but it is an important link in the security chain. Security is only as good or bad as the strength of your weakest link.

Using updated software, applying patches, using HTTPS, using a reliable host in a reliable location, using good passwords are equally important as IP filtering. Whitelisting IP’s goes a long way to ensuring you have least access privileges on connections.

Remember to scan your site with OWASP Zap, Qualys and Kali Linux too.

What IP’s are you going to Whitelist?

Q1) Does your ISP offer a static IP address (or a dynamic IP)?

My ISP does NOT provide a static IP by default (I can pay $20 a month for one (that’s too expensive)).

You can check your public IP by loading http://icanhazip.com/ (this will return your public IPV4 address).

Load https://ipv6.icanhazip.com/ to view your IPV6 IP (if you have one)

Q2) Do you need to whitelist IP addresses while on the go (Mobile)? If so I would recommend you whitelist a VPN’s IP or IP range.

Recently I had Apache web server auto-install and knock out my NGINX web server and I needed to login on a mobile device to investigate,  Luckily I whitelist my VPN’s IP and logged in from my mobile device and resolved the issue.

Use a VPN to get a static IP

If you don’t have a static IP or you want to connect to your site on the go (Mobile) you can set up a VPN and use their static IP

I was using http://cyberghostvpn.com/ to have a static IP but a server failure in Sydney caused my defined whitelisted IP to disappear so I change to https://protonvpn.com/ (as Cybergost were unable to provide known IP’s of VPN servers).

TIP: Don’t just whitelist one server, whitelist a few as you never know when a server will go down.

Here is a screenshot of the 1st VPN I tried (Cyberghost), Cyberghost VPN is connected to a specified server (Dallas).

Cyberghost VN screenshot connected to Dallas

I switched to ProtonVPN.

Here is a screenshot of ProtonVPN connected to a Switzerland server. Read more about Proton VPN here.

Screnshot of Protonvpn

I set Proton VPN to auto-start and connect to my desired server

Screenshot of Proton VNS startup settings

Proton VPN offered me a 7-day PLUS trial (All Countries, 5 devices, highest speed, secure core etc) after I started using the free version (3 countries, 1 device, speed low). I assume everyone gets the same PLUS trail offer.

You can view Proton plans and pricing here.

Ok, now that we know how to get a static IP, let’s configure some firewalls.

Network Firewall at UpCloud

I use the awesome UpCloud to hold my domains (read more about UpCloud performance here). You can log in to your UpCloud Dashboard and load the server list, click your server and then click Firewall and define firewalls.

Firewall: Open IPv4/IPv6 ports for:

  1. ICMP
  2. 53 (DNS)
  3. 80 (HTTP)
  4. 443 (HTTPS)

Only allow access to port 22 from whitelisted IP’s (or IP ranges)

Screenshot of UpCloud firewall screen at https://my.upcloud.com/server/details/

I like to set separate firewall rules for IPV4 and IPV6, for TCP or UDP and I limit rules to certain IP range and port.

Ubuntu Firewall

I also like to run a ufw firewall (more information on ufw) on my Ubuntu server (read this guide on securing Ubuntu in the cloud and running a Lynis audit).

Manually setup firewall rules in ufw.

Don’t forget t restart your firewall

Run a  local nmap scan to find open ports

Don’t be concerned if you see open ports from a local nmap scan (e.g port 22 or 3306), these are locally open.  We need to scan externally to see if these ports are opened.

Scan your site with an external nmap tool like pen-test-tools or here.

Screenshot of a public nmap scanYou should not have non-web based service ports freely open externally (web-based ports e.g 80 and 443 are ok)

Port 22 access should be whitelisted to select IP’s only. You should not have any database ports open externally.

Whitelisting WordPress Access

Download WordFence plugin for WordPress from https://www.wordfence.com/

Read more on downloading WordPress plugins from the command line here. Read my past Wordfence post here.

Once Wordfence is installed open the WordFence All Options screen  (/wp-admin/admin.php?page=WordfenceOptions).

Now you can add your static IP (or IP ranges) to the WordFence whitelist.

Picture of WordFence whitelist

Setup auto block for any non whitelisted Itryingng to login to /wp-login.php

I permanently ban any IP accessing my login page (there are many).

What to do with rejected IP connections?

Wordfence will block connections to WordPress. I’d suggest you setup fail2ban to block other unwanted connections at network level too.

Conclusion

You should now have a VM that will allow port 22 access by whitelisted IP’s and a WordPress that only allows logins from whitelisted IP’s.

Cons

  • If you forget to start your VPN you can’t log in to your VM via port 22 or log in to WordPress (excellent, this is by design).

Pros

  • Secure (need I say more)

I hope this guide helps someone.

Please consider using my UpCloud referral code and get $25 UpCloud VM credit for free when you signup to create a new VM.

https://www.upcloud.com/register/?promo=D84793

Ask a question or recommend an article

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Revision History

v1.2 Added Proton plans link

v1.1 Added auto block WordFence option

v1.0 Initial Post

Adding two sub domains (one pointing to a new UpCloud VM and the other pointing to an NGINX subsite) on Ubuntu 18.04

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Here is how I added two subdomains (one pointing to a new UpCloud VM and the other pointing to an NGINX subsite) on Ubuntu 18.04

If you have not read my previous posts I have now moved my blog to the awesome UpCloud host (signup using this link to get $25 free credit). I compared Digital Ocean, Vultr and UpCloud Disk IO here and UpCloud came out on top by a long way (read the blog post here). Here is my blog post on moving from Vultr to UpCloud.

UpCloud performance is great.

Upcloud Site Speed in GTMetrix

Buy a domain name from Namecheap here.

Domain names for just 88 cents!

Goal(s)

Setup 2x subdomains on https://fearby.com

– Sub Domain #1: https://test.fearby.com (pointing to a dedicated UpCloud VM in Singapore for testing).

– Sub Domain #2: https://audit.fearby.com (pointing to a sub-website on the NGINX/VM that runs https://fearby.com )

Let’s set up the first Sub Domain (dedicated VM) and SSL

Backup

Do back up your server first.

VM

I created a second server ($5 month or $0.07c hour 1,024MB Memory, 25GB Disk, 1024 GB Month Data Transfer) at UpCloud. If you don’t already have an account at UpCloud use this link to signup and get $25 free credit ( https://www.upcloud.com/register/?promo=D84793 ). Read my blog post on why UpCloud is awesome and how I moved my domain to UpCloud.

Once I spun up a second server I obtained the IPv4 and IPv6 IP addresses of the new “test” VM from the UpCloud dashboard.

DNS

These DNS records were already in place with my DNS provider (Cloudflare).

I added these DNS records for the subdomains.

I added a new A NAME record for the new shared NGINX subdomain (for https://audit.fearby.com), this subdomain will be a sub-website that is running off the same server as https://fearby.com

I added another set of records for the new dedicated VM  subdomain (for https://test.fearby.com)

I waited for DNS to replicate around the globe by watching https://www.whatsmydns.net/

Setup a Firewall

On the new dedicated https://test.fearby.com VM, I installed the ufw firewall.

I configured the firewall to allow minimum ports (and added whitelisted IP for port 22 and added UpCloud DNS servers). I will lock this down some more later.

TIP: If your ISP does not offer a dedicated IP try a VPN. I use https://cyberghostvpn.com on OSX and Android.

Firewall rules.

I enabled the firewall.

Install NGINX (on https://test.fearby.com)

On the new dedicated https://test.fearby.com VM I…

Created a new www root

Set permissions

Installed NGINX

I created a placeholder webpage

Configured the root value in /etc/nginx/sites-available/default

Created a symbolic link of the nginx config

Lets Encrypt SSL

I have previously setup Lets encrypt on Ubuntu 16.04 but not 18.04. Certbot had info on setting up Lets Encrypt for 14.x 16.x and 17.x but not 18.x

Full credit for the SSL steps goes to @Linuxize ( tips on setting up Lets Encrypt on Ubuntu 18.04 ). Check out https://linuxize.com/

I installed Lets Encrypt certbot

I created a new Diffie–Hellman key

Map requests to http://test.fearby.com/.well-known/acme-challenge to /var/lib/letsencrypt/.well-known ( Read the linuxize post for detailed steps ).

Create a /etc/nginx/snippets/letsencrypt.conf on http://test.fearby.com and enforce the redirect.

Create a /etc/nginx/snippets/ssl.conf file on http://test.fearby.com

Let’s get a certificate

Certificates have been created 🙂

Now lets edit “/etc/nginx/sites-available/default” on https://test.fearby.com VM and add the cert paths.

Reload NGINX

or

Now let’s setup the second subdomain (subsite off https://fearby.com) and SSL

VM

I already have NGINX on https://fearby.com set up a second site.

DNS

We have already set up a DNS record for https://audit.fearby.com (above)

Firewall

Already configured at https://fearby.com

SSL

Because I had an existing Comodo certificate on https://fearby.com I am going to repeat the steps above to generate a new certificate but save the NGINX config to /etc/nginx/sites-available/audit.fearby.com (this activates the second site)

TIP: Follow the Linuxize guide here (for creating ssl.conf, letsencrypt.conf etc config files), Do a backup and restore if need be.

I created a new Diffie–Hellman key

Let’s get a certificate

Configure NGINX

Map requests to http://audit.fearby.com/.well-known/acme-challenge to /var/lib/letsencrypt/.well-known ( Read the linuxize post for detailed steps ).

I created a new NGINX site ( /etc/nginx/sites-available/audit.fearby.com )

I created a symbolic link of the config file

Reload NGINX

or

How to test the certificate renewal

Automate the renewal in crontab (every 12 hours)

I set this crontab entry up on https://fearby.com and https://test.fearby.com

Conclusion

Yes, I haVe 2 subdomains (1x dedicated VM and the other is a sub-website off an existing server) with SSL certificates.

Ping Results

Webpage Results

Screenshow showing the main site and 2 subdomains in a web browser

Troubleshooting

If you are having troubles generating the initial certificate check that you have not blocked port 80 and don’t have “Strict-Transport-Security” heavers enabled.

I re-ran the certbot command but pointed to the real /www-root (not/var/lib/letsencrypt/)

Create a new

mkdir /www-root/.well-known/
mkdir /www-root/.well-known/acme-challenge/
sudo certbot certonly --agree-tos --email y[email protected] --webroot -w /www-root -d yoursubdomain.domain.com

I hope this guide helps someone.

Please consider using my referral code and get $25 credit for free.

https://www.upcloud.com/register/?promo=D84793

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Revision History

v1.1 Troubleshooting

v1.0 Initial Post

Upgrading an Ubuntu server on UpCloud to add more CPU, Memory and Disk Space

by

Upgrading an Ubuntu server on UpCloud to add more CPU, Memory and Disk Space

If you have not read my previous posts I have now moved my blog from Vultr to the awesome UpCloud host (signup using this link to get $25 free credit).

Recently I compared Digital Ocean, Vultr and UpCloud Disk IO here and UpCloud came out on top by a long way (read the blog post here). Here is my blog post on moving from Vultr to UpCloud.

Spoiler: UpCloud performance is great.

Upcloud Site Speed in GTMetrix

Why Upgrade

I have 1 CPU, 1 GB memory and 50GB storage and it is running well?  I have PHP child workers set up and have set up the preferred use of memory over swap file usage.

View of htop querying processes on Ubuntu

Before UpCloud, when I had 512MB ram on Vultr I had multiple NGINX crashed a day so I used a bash script and scheduled a cron job to clear memory cache when memory fell below 100MB (view the script here).  To further increase the speed of the WordPress I have configured the OS to use memory over the disk.  About once a day free memory falls below 100MB (this is not a problem as my script clears cached items automatically).

Graph of memory falling below 100MB every day

I’d like to add more memory as I am working on some things (watch this space) and I will use the extra memory. I’d prefer the server is set up now for the expected workload.

How to Upgrade

This is how I upgraded from 1xCPU/2GB Memory/50GB Storage/2TB Transferred Data to a 2 CPU/4GB Mmeory/80GB Storage/4TB Transferred Data server.

UpCloud Pricing: https://www.upcloud.com/pricing/

Pricing table form https://www.upcloud.com/pricing/

Upgrade an UpCloud VM

I shut down my existing VM. Read this guide to setup a VM.

Login to the UpCloud dashboard, select your server (confirm the server has shut down) and click General Settings, choose the upgrade and click Update.

Upgrade the Server, shut it down the server and choose upgrade

I confirmed the upgrade options (2x CPU, 4096 MB Memory).

Confirm Upgrade Options

Click Update

Upgrade Applied

After 10 seconds you can start your server from the UpCloud server.

I confirmed the CPU upgrade was visible in the VM

Software Tweaks Post Upgrade.

I added these settings to the top of /etc/nginx/nginx.conf to ensure the extra CPU was used.

I increased PHP FPM ( /etc/php/7.2/fpm/php.ini ) to increase memory usage and child workers. I doubled child workers and max memory limit.

I restarted NGINX and PHP

I tweaked WordPress max memory limits

MySQL Tweaks: I logged into MySQL

I ran “SHOW GLOBAL STATUS” to view stats

mysql> SHOW GLOBAL STATUS;
+-----------------------------------------------+--------------------------------------------------+
| Variable_name                                 | Value                                            |
+-----------------------------------------------+--------------------------------------------------+
| Aborted_clients                               | 0                                                |
| Aborted_connects                              | 0                                                |
| Binlog_cache_disk_use                         | 0                                                |
| Binlog_cache_use                              | 0                                                |
| Binlog_stmt_cache_disk_use                    | 0                                                |
| Binlog_stmt_cache_use                         | 0                                                |
| Bytes_received                                | 3179986                                          |
| Bytes_sent                                    | 223872114                                        |
| Com_admin_commands                            | 0                                                |
| Com_assign_to_keycache                        | 0                                                |
| Com_alter_db                                  | 0                                                |
| Com_alter_db_upgrade                          | 0                                                |
| Com_alter_event                               | 0                                                |
| Com_alter_function                            | 0                                                |
| Com_alter_instance                            | 0                                                |
| Com_alter_procedure                           | 0                                                |
| Com_alter_server                              | 0                                                |
| Com_alter_table                               | 0                                                |
| Com_alter_tablespace                          | 0                                                |
| Com_alter_user                                | 0                                                |
| Com_analyze                                   | 0                                                |
| Com_begin                                     | 0                                                |
| Com_binlog                                    | 0                                                |
| Com_call_procedure                            | 0                                                |
| Com_change_db                                 | 284                                              |
| Com_change_master                             | 0                                                |
| Com_change_repl_filter                        | 0                                                |
| Com_check                                     | 0                                                |
| Com_checksum                                  | 0                                                |
| Com_commit                                    | 0                                                |
| Com_create_db                                 | 0                                                |
| Com_create_event                              | 0                                                |
| Com_create_function                           | 0                                                |
| Com_create_index                              | 0                                                |
| Com_create_procedure                          | 0                                                |
| Com_create_server                             | 0                                                |
| Com_create_table                              | 0                                                |
| Com_create_trigger                            | 0                                                |
| Com_create_udf                                | 0                                                |
| Com_create_user                               | 0                                                |
| Com_create_view                               | 0                                                |
| Com_dealloc_sql                               | 0                                                |
| Com_delete                                    | 18                                               |
| Com_delete_multi                              | 0                                                |
| Com_do                                        | 0                                                |
| Com_drop_db                                   | 0                                                |
| Com_drop_event                                | 0                                                |
| Com_drop_function                             | 0                                                |
| Com_drop_index                                | 0                                                |
| Com_drop_procedure                            | 0                                                |
| Com_drop_server                               | 0                                                |
| Com_drop_table                                | 0                                                |
| Com_drop_trigger                              | 0                                                |
| Com_drop_user                                 | 0                                                |
| Com_drop_view                                 | 0                                                |
| Com_empty_query                               | 0                                                |
| Com_execute_sql                               | 0                                                |
| Com_explain_other                             | 0                                                |
| Com_flush                                     | 0                                                |
| Com_get_diagnostics                           | 0                                                |
| Com_grant                                     | 0                                                |
| Com_ha_close                                  | 0                                                |
| Com_ha_open                                   | 0                                                |
| Com_ha_read                                   | 0                                                |
| Com_help                                      | 0                                                |
| Com_insert                                    | 342                                              |
| Com_insert_select                             | 0                                                |
| Com_install_plugin                            | 0                                                |
| Com_kill                                      | 0                                                |
| Com_load                                      | 0                                                |
| Com_lock_tables                               | 0                                                |
| Com_optimize                                  | 0                                                |
| Com_preload_keys                              | 0                                                |
| Com_prepare_sql                               | 0                                                |
| Com_purge                                     | 0                                                |
| Com_purge_before_date                         | 0                                                |
| Com_release_savepoint                         | 0                                                |
| Com_rename_table                              | 0                                                |
| Com_rename_user                               | 0                                                |
| Com_repair                                    | 0                                                |
| Com_replace                                   | 0                                                |
| Com_replace_select                            | 0                                                |
| Com_reset                                     | 0                                                |
| Com_resignal                                  | 0                                                |
| Com_revoke                                    | 0                                                |
| Com_revoke_all                                | 0                                                |
| Com_rollback                                  | 0                                                |
| Com_rollback_to_savepoint                     | 0                                                |
| Com_savepoint                                 | 0                                                |
| Com_select                                    | 16358                                            |
| Com_set_option                                | 849                                              |
| Com_signal                                    | 0                                                |
| Com_show_binlog_events                        | 0                                                |
| Com_show_binlogs                              | 0                                                |
| Com_show_charsets                             | 0                                                |
| Com_show_collations                           | 0                                                |
| Com_show_create_db                            | 0                                                |
| Com_show_create_event                         | 0                                                |
| Com_show_create_func                          | 0                                                |
| Com_show_create_proc                          | 0                                                |
| Com_show_create_table                         | 0                                                |
| Com_show_create_trigger                       | 0                                                |
| Com_show_databases                            | 3                                                |
| Com_show_engine_logs                          | 0                                                |
| Com_show_engine_mutex                         | 0                                                |
| Com_show_engine_status                        | 0                                                |
| Com_show_events                               | 0                                                |
| Com_show_errors                               | 0                                                |
| Com_show_fields                               | 921                                              |
| Com_show_function_code                        | 0                                                |
| Com_show_function_status                      | 0                                                |
| Com_show_grants                               | 0                                                |
| Com_show_keys                                 | 1                                                |
| Com_show_master_status                        | 0                                                |
| Com_show_open_tables                          | 0                                                |
| Com_show_plugins                              | 0                                                |
| Com_show_privileges                           | 0                                                |
| Com_show_procedure_code                       | 0                                                |
| Com_show_procedure_status                     | 0                                                |
| Com_show_processlist                          | 0                                                |
| Com_show_profile                              | 0                                                |
| Com_show_profiles                             | 0                                                |
| Com_show_relaylog_events                      | 0                                                |
| Com_show_slave_hosts                          | 0                                                |
| Com_show_slave_status                         | 0                                                |
| Com_show_status                               | 6                                                |
| Com_show_storage_engines                      | 0                                                |
| Com_show_table_status                         | 0                                                |
| Com_show_tables                               | 2                                                |
| Com_show_triggers                             | 0                                                |
| Com_show_variables                            | 6                                                |
| Com_show_warnings                             | 1                                                |
| Com_show_create_user                          | 0                                                |
| Com_shutdown                                  | 0                                                |
| Com_slave_start                               | 0                                                |
| Com_slave_stop                                | 0                                                |
| Com_group_replication_start                   | 0                                                |
| Com_group_replication_stop                    | 0                                                |
| Com_stmt_execute                              | 4                                                |
| Com_stmt_close                                | 4                                                |
| Com_stmt_fetch                                | 0                                                |
| Com_stmt_prepare                              | 4                                                |
| Com_stmt_reset                                | 0                                                |
| Com_stmt_send_long_data                       | 4                                                |
| Com_truncate                                  | 2                                                |
| Com_uninstall_plugin                          | 0                                                |
| Com_unlock_tables                             | 0                                                |
| Com_update                                    | 70                                               |
| Com_update_multi                              | 0                                                |
| Com_xa_commit                                 | 0                                                |
| Com_xa_end                                    | 0                                                |
| Com_xa_prepare                                | 0                                                |
| Com_xa_recover                                | 0                                                |
| Com_xa_rollback                               | 0                                                |
| Com_xa_start                                  | 0                                                |
| Com_stmt_reprepare                            | 0                                                |
| Connection_errors_accept                      | 0                                                |
| Connection_errors_internal                    | 0                                                |
| Connection_errors_max_connections             | 0                                                |
| Connection_errors_peer_address                | 0                                                |
| Connection_errors_select                      | 0                                                |
| Connection_errors_tcpwrap                     | 0                                                |
| Connections                                   | 292                                              |
| Created_tmp_disk_tables                       | 1124                                             |
| Created_tmp_files                             | 30                                               |
| Created_tmp_tables                            | 1369                                             |
| Delayed_errors                                | 0                                                |
| Delayed_insert_threads                        | 0                                                |
| Delayed_writes                                | 0                                                |
| Flush_commands                                | 1                                                |
| Handler_commit                                | 6094                                             |
| Handler_delete                                | 33                                               |
| Handler_discover                              | 0                                                |
| Handler_external_lock                         | 38571                                            |
| Handler_mrr_init                              | 0                                                |
| Handler_prepare                               | 0                                                |
| Handler_read_first                            | 2299                                             |
| Handler_read_key                              | 134761                                           |
| Handler_read_last                             | 237                                              |
| Handler_read_next                             | 310119                                           |
| Handler_read_prev                             | 2733                                             |
| Handler_read_rnd                              | 222350                                           |
| Handler_read_rnd_next                         | 472820                                           |
| Handler_rollback                              | 0                                                |
| Handler_savepoint                             | 0                                                |
| Handler_savepoint_rollback                    | 0                                                |
| Handler_update                                | 15605                                            |
| Handler_write                                 | 17310                                            |
| Innodb_buffer_pool_dump_status                | Dumping of buffer pool not started               |
| Innodb_buffer_pool_load_status                | Buffer pool(s) load completed at 180624 23:38:01 |
| Innodb_buffer_pool_resize_status              |                                                  |
| Innodb_buffer_pool_pages_data                 | 1035                                             |
| Innodb_buffer_pool_bytes_data                 | 16957440                                         |
| Innodb_buffer_pool_pages_dirty                | 0                                                |
| Innodb_buffer_pool_bytes_dirty                | 0                                                |
| Innodb_buffer_pool_pages_flushed              | 1936                                             |
| Innodb_buffer_pool_pages_free                 | 7144                                             |
| Innodb_buffer_pool_pages_misc                 | 13                                               |
| Innodb_buffer_pool_pages_total                | 8192                                             |
| Innodb_buffer_pool_read_ahead_rnd             | 0                                                |
| Innodb_buffer_pool_read_ahead                 | 0                                                |
| Innodb_buffer_pool_read_ahead_evicted         | 0                                                |
| Innodb_buffer_pool_read_requests              | 306665                                           |
| Innodb_buffer_pool_reads                      | 950                                              |
| Innodb_buffer_pool_wait_free                  | 0                                                |
| Innodb_buffer_pool_write_requests             | 26509                                            |
| Innodb_data_fsyncs                            | 1229                                             |
| Innodb_data_pending_fsyncs                    | 0                                                |
| Innodb_data_pending_reads                     | 0                                                |
| Innodb_data_pending_writes                    | 0                                                |
| Innodb_data_read                              | 16273920                                         |
| Innodb_data_reads                             | 1078                                             |
| Innodb_data_writes                            | 2857                                             |
| Innodb_data_written                           | 53379584                                         |
| Innodb_dblwr_pages_written                    | 1275                                             |
| Innodb_dblwr_writes                           | 109                                              |
| Innodb_log_waits                              | 0                                                |
| Innodb_log_write_requests                     | 450                                              |
| Innodb_log_writes                             | 585                                              |
| Innodb_os_log_fsyncs                          | 793                                              |
| Innodb_os_log_pending_fsyncs                  | 0                                                |
| Innodb_os_log_pending_writes                  | 0                                                |
| Innodb_os_log_written                         | 664064                                           |
| Innodb_page_size                              | 16384                                            |
| Innodb_pages_created                          | 56                                               |
| Innodb_pages_read                             | 988                                              |
| Innodb_pages_written                          | 1936                                             |
| Innodb_row_lock_current_waits                 | 0                                                |
| Innodb_row_lock_time                          | 0                                                |
| Innodb_row_lock_time_avg                      | 0                                                |
| Innodb_row_lock_time_max                      | 0                                                |
| Innodb_row_lock_waits                         | 0                                                |
| Innodb_rows_deleted                           | 2                                                |
| Innodb_rows_inserted                          | 19219                                            |
| Innodb_rows_read                              | 249102                                           |
| Innodb_rows_updated                           | 77                                               |
| Innodb_num_open_files                         | 81                                               |
| Innodb_truncated_status_writes                | 0                                                |
| Innodb_available_undo_logs                    | 128                                              |
| Key_blocks_not_flushed                        | 0                                                |
| Key_blocks_unused                             | 12751                                            |
| Key_blocks_used                               | 645                                              |
| Key_read_requests                             | 321877                                           |
| Key_reads                                     | 648                                              |
| Key_write_requests                            | 196                                              |
| Key_writes                                    | 150                                              |
| Locked_connects                               | 0                                                |
| Max_execution_time_exceeded                   | 0                                                |
| Max_execution_time_set                        | 0                                                |
| Max_execution_time_set_failed                 | 0                                                |
| Max_used_connections                          | 3                                                |
| Max_used_connections_time                     | 2018-06-24 23:43:48                              |
| Not_flushed_delayed_rows                      | 0                                                |
| Ongoing_anonymous_transaction_count           | 0                                                |
| Open_files                                    | 229                                              |
| Open_streams                                  | 0                                                |
| Open_table_definitions                        | 206                                              |
| Open_tables                                   | 786                                              |
| Opened_files                                  | 502                                              |
| Opened_table_definitions                      | 208                                              |
| Opened_tables                                 | 817                                              |
| Performance_schema_accounts_lost              | 0                                                |
| Performance_schema_cond_classes_lost          | 0                                                |
| Performance_schema_cond_instances_lost        | 0                                                |
| Performance_schema_digest_lost                | 0                                                |
| Performance_schema_file_classes_lost          | 0                                                |
| Performance_schema_file_handles_lost          | 0                                                |
| Performance_schema_file_instances_lost        | 0                                                |
| Performance_schema_hosts_lost                 | 0                                                |
| Performance_schema_index_stat_lost            | 0                                                |
| Performance_schema_locker_lost                | 0                                                |
| Performance_schema_memory_classes_lost        | 0                                                |
| Performance_schema_metadata_lock_lost         | 0                                                |
| Performance_schema_mutex_classes_lost         | 0                                                |
| Performance_schema_mutex_instances_lost       | 0                                                |
| Performance_schema_nested_statement_lost      | 0                                                |
| Performance_schema_prepared_statements_lost   | 0                                                |
| Performance_schema_program_lost               | 0                                                |
| Performance_schema_rwlock_classes_lost        | 0                                                |
| Performance_schema_rwlock_instances_lost      | 0                                                |
| Performance_schema_session_connect_attrs_lost | 0                                                |
| Performance_schema_socket_classes_lost        | 0                                                |
| Performance_schema_socket_instances_lost      | 0                                                |
| Performance_schema_stage_classes_lost         | 0                                                |
| Performance_schema_statement_classes_lost     | 0                                                |
| Performance_schema_table_handles_lost         | 0                                                |
| Performance_schema_table_instances_lost       | 0                                                |
| Performance_schema_table_lock_stat_lost       | 0                                                |
| Performance_schema_thread_classes_lost        | 0                                                |
| Performance_schema_thread_instances_lost      | 0                                                |
| Performance_schema_users_lost                 | 0                                                |
| Prepared_stmt_count                           | 0                                                |
| Qcache_free_blocks                            | 1                                                |
| Qcache_free_memory                            | 16760152                                         |
| Qcache_hits                                   | 0                                                |
| Qcache_inserts                                | 0                                                |
| Qcache_lowmem_prunes                          | 0                                                |
| Qcache_not_cached                             | 16355                                            |
| Qcache_queries_in_cache                       | 0                                                |
| Qcache_total_blocks                           | 1                                                |
| Queries                                       | 19164                                            |
| Questions                                     | 19155                                            |
| Select_full_join                              | 0                                                |
| Select_full_range_join                        | 0                                                |
| Select_range                                  | 2677                                             |
| Select_range_check                            | 0                                                |
| Select_scan                                   | 2098                                             |
| Slave_open_temp_tables                        | 0                                                |
| Slow_launch_threads                           | 0                                                |
| Slow_queries                                  | 0                                                |
| Sort_merge_passes                             | 12                                               |
| Sort_range                                    | 4859                                             |
| Sort_rows                                     | 244452                                           |
| Sort_scan                                     | 854                                              |
| Ssl_accept_renegotiates                       | 0                                                |
| Ssl_accepts                                   | 0                                                |
| Ssl_callback_cache_hits                       | 0                                                |
| Ssl_cipher                                    |                                                  |
| Ssl_cipher_list                               |                                                  |
| Ssl_client_connects                           | 0                                                |
| Ssl_connect_renegotiates                      | 0                                                |
| Ssl_ctx_verify_depth                          | 0                                                |
| Ssl_ctx_verify_mode                           | 0                                                |
| Ssl_default_timeout                           | 0                                                |
| Ssl_finished_accepts                          | 0                                                |
| Ssl_finished_connects                         | 0                                                |
| Ssl_server_not_after                          |                                                  |
| Ssl_server_not_before                         |                                                  |
| Ssl_session_cache_hits                        | 0                                                |
| Ssl_session_cache_misses                      | 0                                                |
| Ssl_session_cache_mode                        | NONE                                             |
| Ssl_session_cache_overflows                   | 0                                                |
| Ssl_session_cache_size                        | 0                                                |
| Ssl_session_cache_timeouts                    | 0                                                |
| Ssl_sessions_reused                           | 0                                                |
| Ssl_used_session_cache_entries                | 0                                                |
| Ssl_verify_depth                              | 0                                                |
| Ssl_verify_mode                               | 0                                                |
| Ssl_version                                   |                                                  |
| Table_locks_immediate                         | 11962                                            |
| Table_locks_waited                            | 0                                                |
| Table_open_cache_hits                         | 19395                                            |
| Table_open_cache_misses                       | 817                                              |
| Table_open_cache_overflows                    | 12                                               |
| Tc_log_max_pages_used                         | 0                                                |
| Tc_log_page_size                              | 0                                                |
| Tc_log_page_waits                             | 0                                                |
| Threads_cached                                | 2                                                |
| Threads_connected                             | 1                                                |
| Threads_created                               | 3                                                |
| Threads_running                               | 1                                                |
| Uptime                                        | 2944                                             |
| Uptime_since_flush_status                     | 2944                                             |
+-----------------------------------------------+--------------------------------------------------+
353 rows in set (0.00 sec)

Read more on SHOW GLOBAL STATUS here. Read more on the values here.

I can see NO major errors here (possibly due to UpClouds awesome disk IO) so I won’t be making memory tweaks in MySQL. Sign Up using this link and get $25 credit free on UpCloud and see for yourself how fast they are.

Configure Ubuntu System Memory Usage

Edit /etc/sysctl.conf

Add the following to allow things to sit in ram longer

Snip from: https://www.kernel.org/doc/Documentation/sysctl/vm.txt

This percentage value controls the tendency of the kernel to reclaim the memory which is used for caching of directory and inode objects.

At the default value of vfs_cache_pressure=100 the kernel will attempt to reclaim dentries and inodes at a "fair" rate with respect to pagecache and swapcache reclaim.  Decreasing vfs_cache_pressure causes the kernel to prefer to retain dentry and inode caches. When vfs_cache_pressure=0, the kernel will never reclaim dentries and inodes due to memory pressure and this can easily lead to out-of-memory conditions. Increasing vfs_cache_pressure beyond 100 causes the kernel to prefer to reclaim dentries and inodes.

Increasing vfs_cache_pressure significantly beyond 100 may have negative performance impact. Reclaim code needs to take various locks to find freeable directory and inode objects. With vfs_cache_pressure=1000, it will look for ten times more freeable objects than there are."

Read these pages here and here regarding setting MySQL memory.

Reboot

Resize the disk

The 2x CPU, 4GB memory plan comes with 80GB storage allowance.  My disk at present is 50GB and I will update the size soon following this guide soon.

Upgrade disk from 50gb to 80GB soon

Quick Benchmark

I used loader.io to load 500 users to access my site in 1 minute.

HTOP showing 2x busy CPU's running at 60%

The benchmark worked with no errors.

Loader.io Success with 500 concurrent users

This benchmark was performed with no Cloudflare caching. I should get Cloudflare caching working again to lower the average response time. I loaded my website manually in Google Chrome while loader.io threw 500 users at my site and it loaded very fast.

Conclusion

After a few days, I checked my memory logs and there were no low memory triggers (just normal internal memory management triggers). Ubuntu was happier.

No Low memory low triggers

This graph was taken before I set “vm.vfs_cache_pressure” so I will update this graph in a few days.

I hope this guide helps someone.

Please consider using my referral code and get $25 credit for free.

https://www.upcloud.com/register/?promo=D84793

Ask a question or recommend an article

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Revision History

1.0 Initial Post

How to use the UpCloud API to manage your UpCloud servers

by

How to use the UpCloud API to manage your UpCloud servers.

If you have not read my previous posts I have now moved my blog etc to the awesome UpCloud host. Sign up using this link to get $25 free credit.

I recently compared Digital Ocean, Vultr and UpCloud Disk IO here and UpCloud came out on top by a long way (read the blog post here).

Here is my blog post on moving from Vultr to UpCloud.

Spoiler: UpCloud performance is great.

Upcloud Site Speed in GTMetrix

I have never had an UpCloud page load take longer than 2 seconds since moving.

UpCloud API

UpCloud has an API that we can opt into to using where we can manage servers. Read the official UpCloud API documentation here.

The API allows you to control:

  • Accounts
  • Pricing
  • Zones
  • Timezones
  • Plans
  • Servers
  • Storages
  • IP-Addresses
  • Firewall
  • Tags
  • etc

Create a sub-account to query the API

You should create a new user account (in the UpCloud dashboard) just for API access. I created two accounts for use on my server and on my home laptop and my server (and set a limiting IP(s) that can access it).

Create a Sub Account for API Access

Login to your UpCloud account (create an account here and get $25 free credit),

  1. Click My Accounts,
  2. Click User Accounts,
  3. Click Change on your user and enable API connections.
  4. TIP: Set up an IP rule to limit access to your API for security (I set up a VPN to get a static IP on my dynamic IP Internet host at home)).
  5. Save the changes

Enable API Connections

TIP: Lockdown the account to have the minimum permissions required.

e.g

  • Disable access to the control panel (Untick).
  • Allow API Connections (Tick) and specify an IP
  • Disable access to billing contact (Untick).
  • Disable access to billing section in the control panel (Untick).
  • Disable allowing of emails to billing contact (Untick).
  • Allow or Remove access to all server (or manually add access to desired servers)
  • Allow or Remove access to modify storage (or manually allow or remove access to desired storage)
  • etc

Lock down the account to the minimum needed

Save the account.

Now let’s make our first API call

I use OSX and I use the awesome Paw API testing tool from https://paw.cloud (This is not a plug, they are awesome). Postman is a popular API testing tool too. Any good programing language or CLI will allow you to send API requests.

First, let’s prepare the authorization string (this is a Base64 encoded combination of your username and password) read more here.

  1. Head over to https://www.base64encode.org/
  2. Click the Encode tab
  3. Add your “username:password” (without the quotes).
  4. Click Encode

A Base64 string will be outputted 🙂

e.g > eW91cmFwaXVzZXJuYW1lOnlvdXJzdXBlcnNlY3VyZXBhc3N3b3Jk

fyi

You can encode also Encode and Decode Base64 from the Ubuntu Command line

Encode Base64 from the CLI Sample

Decode Base64 from the CLI Sample

Now we can add an “Authorization Basic” token to the API request in Paw.

Authorization Header added with my base64 token.

A quick test of the UpCloud Prices API endpoint https://api.upcloud.com/1.2/price reveals the API is working.

Add Authorization Token

I can now see a full breakdown of my service prices in JSON 🙂

Query My Account

OK, Let’s see how much credit I have left by querying the https://api.upcloud.com/1.2/account, I duplicated the item in Paw and changed the URL to https://api.upcloud.com/1.2/account but no data returned?

I had to enable “Access to Billing section in Control Panel” for the user before this data returned from the API (make sense).

> HTTP/1.1 200 OK

Query (GET)

GET /1.2/account HTTP/1.1
Host: api.upcloud.com
User-Agent: Paw/3.1.7 (Macintosh; OS X/10.13.5) NSURLConnection/1452.23
Authorization: Basic *******************************************

Output

HTTP/1.1 200 OK
Date: Sun, 17 Jun 2018 04:23:32 GMT
Content-Type: application/json; charset=UTF-8
Connection: close
Content-Length: 91
Server: Apache

{
   "account" : {
      "credits" : 2500.00,
      "username" : "yourapiusername"
   }
}

“2500.00” = cents ($25)

Query All of Your Servers

Ok, Let’s get server information by querying https://api.upcloud.com/1.2/server

Query (GET)

GET /1.2/server HTTP/1.1
Host: api.upcloud.com
User-Agent: Paw/3.1.7 (Macintosh; OS X/10.13.5) NSURLConnection/1452.23
Authorization: Basic ##############base64hash##############

Output

HTTP/1.1 200 OK
Date: Sun, 17 Jun 2018 04:32:22 GMT
Content-Type: application/json; charset=UTF-8
Connection: close
Content-Length: 1154
Server: Apache

{
   "servers" : {
      "server" : [
         {
            "core_number" : "1",
            "hostname" : "server1nameredacted.com",
            "license" : 0,
            "memory_amount" : "2048",
            "plan" : "1xCPU-2GB",
            "plan_ipv4_bytes" : "3472464313",
            "plan_ipv6_bytes" : "166293599",
            "state" : "started",
            "tags" : {
               "tag" : [
                  "tag1"
               ]
            },
            "title" : "server1nameredacted.com",
            "uuid" : "########-####-####-####-############",
            "zone" : "us-chi1"
         },
         {
            "core_number" : "1",
            "hostname" : "server2nameredacted.com",
            "license" : 0,
            "memory_amount" : "1024",
            "plan" : "1xCPU-1GB",
            "plan_ipv4_bytes" : "198911",
            "plan_ipv6_bytes" : "19742",
            "state" : "started",
            "tags" : {
               "tag" : [
                  "tag2"
               ]
            },
            "title" : "server1nameredacted.com",
            "uuid" : "########-####-####-####-############",
            "zone" : "us-chi1"
         }
      ]
   }
}

Query Server Information

I have redated the UUID’s for my servers but once you know them you can query them by hitting https://api.upcloud.com/1.2/server/########-####-####-####-############

Query (GET)

Output

HTTP/1.1 200 OK
Date: Sun, 17 Jun 2018 04:45:14 GMT
Content-Type: application/json; charset=UTF-8
Connection: close
Content-Length: 1656
Server: Apache

{
   "server" : {
      "boot_order" : "cdrom,disk",
      "core_number" : "1",
      "firewall" : "on",
      "host" : redacted,
      "hostname" : "server1nameredacted.com",
      "ip_addresses" : {
         "ip_address" : [
            {
               "access" : "private",
               "address" : "##.#.#.###",
               "family" : "IPv4"
            },
            {
               "access" : "public",
               "address" : "###.###.###.###",
               "family" : "IPv4",
               "part_of_plan" : "yes"
            },
            {
               "access" : "public",
               "address" : "####:####:####:####:####:####:########",
               "family" : "IPv6"
            }
         ]
      },
      "license" : 0,
      "memory_amount" : "2048",
      "nic_model" : "virtio",
      "plan" : "1xCPU-2GB",
      "plan_ipv4_bytes" : "3519033266",
      "plan_ipv6_bytes" : "168200052",
      "state" : "started",
      "storage_devices" : {
         "storage_device" : [
            {
               "address" : "virtio:0",
               "boot_disk" : "0",
               "part_of_plan" : "yes",
               "storage" : "########-####-####-####-############",
               "storage_size" : 50,
               "storage_title" : "system",
               "type" : "disk"
            }
         ]
      },
      "tags" : {
         "tag" : [
            "fearby"
         ]
      },
      "timezone" : "Australia/Sydney",
      "title" : "server1nameredacted.com",
      "uuid" : "########-####-####-####-############",
      "video_model" : "cirrus",
      "vnc" : "off",
      "vnc_password" : "#########################",
      "zone" : "us-chi1"
   }
}

The servers name, IPv4 and IPV6 network adapters are listed, CPU(s), Memory, Disk Sized and UUID’s are all visible 🙂

Surprisingly the VNC password is visible (enabling access to the root console).

TIP: Ensure your API account is safe and secure.

Query Storage Information

Now, Let’s query the storage with the GUID from above by querying https://api.upcloud.com/1.2/storage/########-####-####-####-############

Query (GET)

GET /1.2/storage/########-####-####-####-############ HTTP/1.1
Host: api.upcloud.com
User-Agent: Paw/3.1.7 (Macintosh; OS X/10.13.5) NSURLConnection/1452.23
Authorization: Basic  ##############base64hash##############

Output

HTTP/1.1 200 OK
Date: Sun, 17 Jun 2018 04:53:36 GMT
Content-Type: application/json; charset=UTF-8
Connection: close
Content-Length: 559
Server: Apache

{
   "storage" : {
      "access" : "private",
      "backup_rule" : {},
      "backups" : {
         "backup" : [
            "########-####-####-####-############"
         ]
      },
      "license" : 0,
      "part_of_plan" : "yes",
      "servers" : {
         "server" : [
            "########-####-####-####-############"
         ]
      },
      "size" : 50,
      "state" : "online",
      "tier" : "maxiops",
      "title" : "system",
      "type" : "normal",
      "uuid" : "########-####-####-####-############",
      "zone" : "us-chi1"
   }
}

I can see information about the storage’s assigned server and backups 🙂

Query Backup Information

Backup storage can be queried with the same storge API endpoint https://api.upcloud.com/1.2/storage/########-####-####-####-############

Query (GET)

Output

HTTP/1.1 200 OK
Date: Sun, 17 Jun 2018 05:01:11 GMT
Content-Type: application/json; charset=UTF-8
Connection: close
Content-Length: 412
Server: Apache

{
   "storage" : {
      "access" : "private",
      "created" : "2018-06-16T04:47:56Z",
      "license" : 0,
      "origin" : "########-####-####-####-############",
      "servers" : {
         "server" : []
      },
      "size" : 50,
      "state" : "online",
      "title" : "On-Demand Backup",
      "type" : "backup",
      "uuid" : "########-####-####-####-############",
      "zone" : "us-chi1"
   }
}

Rename Backup

One thing that I would like to be able to do is to rename on-demand backups in the UpCloud dashboard (this is not a feature yet) but I can rename manual backup’s in the API though 🙂

Boring “On-Demand Backup” label.

Rename Backups Not possible in the GUI

I tried sending JSON to https://api.upcloud.com/1.2/storage/########-####-####-####-############ to rename a backup but kept getting an error?

JSON

{
> “storage”: {
> “title”: “Latest manual backup , Working NGINX, PHP, MySQL w Tweaks”,
> “size”: “50”
> }
> }

Result

> “error_code” : “CONTENT_TYPE_INVALID”,
> “error_message” : “The Content-Type header has an invalid value.”

I googled and found an old manual for UpClouds API (official support here).

I added these missing content-type headers (108 was the length in chars of the payload)

> Content-Type: application/json; Charset=UTF-8'
> Content-Length: 108

Still no go?

I think the content-length value is wrong, more here.

I fixed it, it turned out I had a semicolon in the Content-Type value. The JSON RFC always assumes that Content-Type is UTF8 encoded (more here).

This Fails

This Works

Content-Type: application/json

Now I can rename my Backup (storage). I manually calculated the length of the JSON payload and added a “Content-Length” header and value.

Query (PUT)

Output

HTTP/1.1 202 ACCEPTED
Date: Sun, 17 Jun 2018 05:47:02 GMT
Content-Type: application/json; charset=UTF-8
Connection: close
Content-Length: 453
Server: Apache

{
   "storage" : {
      "access" : "private",
      "created" : "2018-06-16T04:47:56Z",
      "license" : 0,
      "origin" : "########-####-####-####-############",
      "servers" : {
         "server" : []
      },
      "size" : 50,
      "state" : "online",
      "title" : "Latest manual backup , Working NGINX, PHP, MySQL w Tweaks",
      "type" : "backup",
      "uuid" : "########-####-####-####-############",
      "zone" : "us-chi1"
   }
}

Success 🙂

Backup Renamed

Create a Backup

Backups can be performed with a “/backup” added to the end of the query string.

Query (POST)

Output

Success (UpCloud GUI)

Conclusion

UpCloud does have great API docs.

I can easily integrate this into bash scripts to manage my servers via API and a future Java app for managing servers.

Paw does give CURL output to allow me to copy working API’s for use in BASH 🙂

More to come

  1. BASH Script to Deploy and configure a server on UpCloud via Initialization scripts (or manual) (1 week)
  2. JAVA App to manage your server (3 months)

If you are signing up for UpCloud please consider using my referral code and get $25 credit for free.

Read my setup guide here.

https://www.upcloud.com/register/?promo=D84793

I hope this guide helps someone.

Ask a question or recommend an article

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Revision History

V1.1 updated typo

v1.0 Initial Post.

Measuring VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 4 of 4

by

How can you measure VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 4 of 4

Read Part 1, Part 2, Part 3 or Part 4

I ran the MySQL benchmark preparation command again (no problem this time).

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=###################### prepare
sysbench 0.4.12:  multi-threaded system evaluation benchmark

Creating table 'sbtest'...
Creating 1000000 records in table 'sbtest'...

Test table and records created

Test Records Created

Now I can benchmark MySQL on my main server.

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=################################# --max-time=60 --oltp-read-only=on --max-requests=0 --num-threads=8 run

RAW Output

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 8

Doing OLTP test.
Running mixed OLTP test
Doing read-only test
Using Special distribution (12 iterations,  1 pct of values are returned in 75 pct cases)
Using "BEGIN" for starting transactions
Using auto_inc on the id column
Threads started!
Time limit exceeded, exiting...
(last message repeated 7 times)
Done.

OLTP test statistics:
    queries performed:
        read:                            336210
        write:                           0
        other:                           48030
        total:                           384240
    transactions:                        24015  (400.09 per sec.)
    deadlocks:                           0      (0.00 per sec.)
    read/write requests:                 336210 (5601.24 per sec.)
    other operations:                    48030  (800.18 per sec.)

Test execution summary:
    total time:                          60.0242s
    total number of events:              24015
    total time taken by event execution: 480.0242
    per-request statistics:
         min:                                  1.79ms
         avg:                                 19.99ms
         max:                                141.00ms
         approx.  95 percentile:              37.49ms

Threads fairness:
    events (avg/stddev):           3001.8750/27.36
    execution time (avg/stddev):   60.0030/0.01

Results

queries performed (in 60 seconds):

  • read: 336210
  • other: 48030
  • total: 384240

I decided to add an index to see if I can speed this query up (read the MySQL index page here). I added an index (in Adminer) on the columns “Id” and “pad” for the sbtest table in the test database

I restarted the MySQL process

mysql restart
[ ok ] Restarting mysql (via systemctl): mysql.service.

I ran the same benchmark again.

Raw Output

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=########################## --max-time=60 --oltp-read-only=on --max-requests=0 --num-threads=8 run
sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 8

Doing OLTP test.
Running mixed OLTP test
Doing read-only test
Using Special distribution (12 iterations,  1 pct of values are returned in 75 pct cases)
Using "BEGIN" for starting transactions
Using auto_inc on the id column
Threads started!
Time limit exceeded, exiting...
(last message repeated 7 times)
Done.

OLTP test statistics:
    queries performed:
        read:                            426538
        write:                           0
        other:                           60934
        total:                           487472
    transactions:                        30467  (507.69 per sec.)
    deadlocks:                           0      (0.00 per sec.)
    read/write requests:                 426538 (7107.67 per sec.)
    other operations:                    60934  (1015.38 per sec.)

Test execution summary:
    total time:                          60.0110s
    total number of events:              30467
    total time taken by event execution: 479.9124
    per-request statistics:
         min:                                  5.75ms
         avg:                                 15.75ms
         max:                                138.57ms
         approx.  95 percentile:              25.10ms

Threads fairness:
    events (avg/stddev):           3808.3750/8.70
    execution time (avg/stddev):   59.9891/0.00

Results

The quick index added 20% extra throughput on queries 🙂

Mysql before and after an index

Don’t forget to delete your test database

DROP DATABASE `test`;

Viewing MySQL Index Usage (on the “test” database)

Query to show Index stats for a table ‘test’

SELECT
 OBJECT_SCHEMA as 'Database', OBJECT_NAME as 'Table', 
 INDEX_NAME as 'Index', 
 COUNT_STAR, 
 SUM_TIMER_WAIT,  MIN_TIMER_WAIT, AVG_TIMER_WAIT, MAX_TIMER_WAIT, 
 COUNT_READ, 
 SUM_TIMER_READ, MIN_TIMER_READ, AVG_TIMER_READ, MAX_TIMER_READ,  
 COUNT_FETCH, SUM_TIMER_FETCH, MIN_TIMER_FETCH, AVG_TIMER_FETCH, MAX_TIMER_FETCH
FROM 
 performance_schema.table_io_waits_summary_by_index_usage
WHERE 
 object_schema = 'test'

I can see the MySQL PRIMARY index is getting used 🙂

Index Summary

Read more in viewable query stats (columns) here.

Other System Information Tools

Show processor information

cat /proc/cpuinfo

Output

processor       : 0
vendor_id       : GenuineIntel
cpu family      : 6
model           : 61
model name      : Virtual CPU a7769a6388d5
stepping        : 2
microcode       : 0x1
cpu MHz         : 2394.454
cache size      : 16384 KB
physical id     : 0
siblings        : 1
core id         : 0
cpu cores       : 1
apicid          : 0
initial apicid  : 0
fpu             : yes
fpu_exception   : yes
cpuid level     : 13
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 syscall nx rdtscp lm constant_tsc rep_good nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single kaiser fsgsbase bmi1 avx2 smep bmi2 erms invpcid xsaveopt arat
bugs            : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass
bogomips        : 4788.90
clflush size    : 64
cache_alignment : 64
address sizes   : 40 bits physical, 48 bits virtual
power management:

Memory Information

You can assign 512MB, 1GB, 2GB or more memory to a server on Vultr, Read my guide here on upgrading resources for Vultr VM’s here.

Only upgrade your server’s memory when server processes demand it, there is no need to pay for extra idle memory. Read my older guides on upgrading Digital Ocean and AWS servers.

I use the htop utility to monitor memory and processes. The memory usage will depend on how you have configured your server to use connection pools in code, MySQL or services.  Also what memory demands do you get in pean bandwidth times?

HTOP

You can check your server memory details on Ubuntu with this command

cat /proc/meminfo

Output

MemTotal:        2048104 kB
MemFree:           96176 kB
MemAvailable:     693072 kB
Buffers:          183476 kB
Cached:           526124 kB
SwapCached:            0 kB
Active:          1467220 kB
Inactive:         243228 kB
Active(anon):    1070464 kB
Inactive(anon):    27004 kB
Active(file):     396756 kB
Inactive(file):   216224 kB
Unevictable:        3652 kB
Mlocked:            3652 kB
SwapTotal:             0 kB
SwapFree:              0 kB
Dirty:                64 kB
Writeback:             0 kB
AnonPages:       1004504 kB
Mapped:           114664 kB
Shmem:             94192 kB
Slab:             192692 kB
SReclaimable:     171892 kB
SUnreclaim:        20800 kB
KernelStack:        3072 kB
PageTables:        20528 kB
NFS_Unstable:          0 kB
Bounce:                0 kB
WritebackTmp:          0 kB
CommitLimit:     1024052 kB
Committed_AS:    2424332 kB
VmallocTotal:   34359738367 kB
VmallocUsed:           0 kB
VmallocChunk:          0 kB
HardwareCorrupted:     0 kB
AnonHugePages:    247808 kB
CmaTotal:              0 kB
CmaFree:               0 kB
HugePages_Total:       0
HugePages_Free:        0
HugePages_Rsvd:        0
HugePages_Surp:        0
Hugepagesize:       2048 kB
DirectMap4k:       67440 kB
DirectMap2M:     2029568 kB

Use Memory or Disk (Swap)

You can configure the use of Memory over Disk by configuring your/etc/sysctl.conf file (setting value “vm.swappiness”)

You can check your swap file settings by running the following command

cat /proc/sys/vm/swappiness
1

Or By running

sysctl vm.swappiness
vm.swappiness = 1

Set a new swap file value by editing /etc/sysctl.conf

sudo nano /etc/sysctl.conf

Set the following to use more ram over the swap disk.

vm.swappiness = 1

Read about swappiness values here: https://en.wikipedia.org/wiki/Swappiness

Service Performance

Performance (and allocated resources) depends on the demands of your operating system and installed software

What operating system do you have?

lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 16.04.4 LTS
Release:        16.04
Codename:       xenial

View NGINX Status, how much memory does it use?

/etc/init.d/nginx status
● nginx.service - A high performance web server and a reverse proxy server
   Loaded: loaded (/lib/systemd/system/nginx.service; enabled; vendor preset: enabled)
   Active: active (running) since Fri 2018-05-25 21:28:25 AEST; 1 weeks 3 days ago
     Docs: man:nginx(8)
 Main PID: #### (nginx)
    Tasks: 3
   Memory: 58.9M
      CPU: 33min 11.515s
   CGroup: /system.slice/nginx.service
           ├─#### nginx: master process /usr/sbin/nginx -g daemon on; master_process on;
           ├─#### nginx: worker process
           └─#### nginx: cache manager process

PHP (and Child Worker) status how much memory does it use and how many child workers do you have? Read my add PHP child workers post here (and update to PHP 7.2 here)

sudo service php7.2-fpm status
● php7.2-fpm.service - The PHP 7.2 FastCGI Process Manager
   Loaded: loaded (/lib/systemd/system/php7.2-fpm.service; enabled; vendor preset: enabled)
   Active: active (running) since Fri 2018-05-25 21:28:26 AEST; 1 weeks 3 days ago
     Docs: man:php-fpm7.2(8)
 Main PID: #### (php-fpm7.2)
   Status: "Processes active: 0, idle: 20, Requests: 75911, slow: 0, Traffic: 0.1req/sec"
    Tasks: 21
   Memory: 694.2M
      CPU: 20h 49min 45.132s
   CGroup: /system.slice/php7.2-fpm.service
           ├─ #### php-fpm: master process (/etc/php/7.2/fpm/php-fpm.conf)
           ├─ #### php-fpm: pool www-acc
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-acc
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           ├─ #### php-fpm: pool www-usr
           └─ #### php-fpm: pool www-usr

MySQL Status

sudo service mysql status
● mysql.service - MySQL Community Server
   Loaded: loaded (/lib/systemd/system/mysql.service; enabled; vendor preset: enabled)
   Active: active (running) since Fri 2018-05-25 21:28:27 AEST; 1 weeks 3 days ago
 Main PID: ##### (mysqld)
    Tasks: 35
   Memory: 405.9M
      CPU: 2h 17min 31.822s
   CGroup: /system.slice/mysql.service
           └─#### /usr/sbin/mysqld

Shared VM Hosts

One of the biggest impacts (after server latency) for your server is not the disk performance but the number of hosts/websites on the server who are also using the disk and server resources.

Reverse IP Lookup

I have 80 other web servers on my server (based on a reverse lookup).

I may move to a dedicated box when I can afford it.

Security

Above all else ensure that security is number 1 priority and make performance second priority.

Scan your site with Zap, Qualys and Kali Linux. Performance means nothing if you are hacked.

website-report

Simulated concurrent users

You can use Siege to test the maximum concurrent users accessing your site before the server starts to drop connections.

FYI: If you use Cloudflare (you should) this may not work as it will block connections.

Install Siege

sudo apt-get install siege

Test  your server with 10 concurrent serves for 1 minute

siege -t1m c10 'https://yourserver.com/'

Results

siege -t1m c10 'https://yourserver.com/'
** SIEGE 3.0.8
** Preparing 15 concurrent users for battle.
The server is now under siege...
Lifting the server siege...      done.

Transactions:                    417 hits
Availability:                 100.00 %
Elapsed time:                  59.01 secs
Data transferred:               8.24 MB
Response time:                  1.62 secs
Transaction rate:               7.07 trans/sec
Throughput:                     0.14 MB/sec
Concurrency:                   11.46
Successful transactions:         417
Failed transactions:               0
Longest transaction:            2.26
Shortest transaction:           1.49

Keep upping the connections (from 10 above) to a limit where connections start dropping.

I tried 25 then 50 concurrent users hitting a server on Digital Ocean and it did not fail.

Conclusion

  • Choose a server near your customers
  • Change hosts if one is faster and cheaper
  • Measure or benchmark your server (and compare over time).
  • Use Cloudflare

Create your own server today

  • Create your own server on Vultr here.
  • Create your own server on Digital Ocean here.
  • Create your own server on UpCloud here.

And remember you can install the Runcloud server management dashboard here.

I hope this guide helps someone.

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Measuring VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 3 of 4

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How can you measure VM performance (CPU, Disk, Latency, Concurrent Users etc) on Ubuntu and comparing Vultr, Digital Ocean and UpCloud – Part 3 of 4

Read Part 1, Part 2, Part 3 or Part 4

I used these commands to generate bonnie++ reports from the data in part 2

echo "<h1>Bonnie Results</h1>" > /www-data/bonnie.html
echo "<h2>Vultr (Sydney)</h2>" >> /www-data/bonnie.html
echo "1.97,1.97,servername,1,1528177870,4G,,656,99,308954,68,113706,33,1200,92,188671,30,10237,251,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,26067us,119ms,179ms,29139us,26069us,16118us,1463us,703us,880us,263us,119us,593us" | bon_csv2html >> /www-data/bonnie.html
echo "<h2>Digital Ocean (London)</h2>" >> /www-data/bonnie.html
echo "1.97,1.97,servername,1,1528186398,4G,,699,99,778636,74,610414,60,1556,99,1405337,59,+++++,+++,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,17678us,10099us,17014us,7027us,3067us,2366us,1243us,376us,611us,108us,59us,181us" | bon_csv2html >> /www-data/bonnie.html
echo "<h2>UpCloud (Singapore)</h2>" >> /www-data/bonnie.html
echo "1.97,1.97,servername,1,1528226703,4G,,1014,99,407179,24,366622,32,2137,99,451886,17,+++++,+++,16,,,,,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,+++++,+++,11297us,54232us,16443us,4949us,44883us,1595us,264us,340us,561us,138us,66us,327us" | bon_csv2html >> /www-data/bonnie.html

Image of results here

Bonnie Results

Network Performace

IMHO Network Latency is the biggest impact on server performance, Read my old post on scalability on a budget here. I am in Australia an having a server in Singapore was too far away and latency was terrible.

Here is a non-scientific example of pinging a Vultr, Digital Ocean and UpCloud server in three different locations (and Google).

Ping Test

Test Ping Results

Latency matters, run a https://www.webpagetest.org/ scan over your site to see why.

Adding https added almost 0.7 seconds to https communications in the past on Digital Ocean (a few thousand kilometres away). The longer the latency the longer HTTPS handshakes take.

SSL

Deploying a server to Singapore (in my experience) is bad if your visitors are in Australia. But deploying to other regions may be lower in cost though. It’s a trade-off.

Server Location

Deploy servers as close as you can to your customers is the best tip for performance.

Deploy serves close to your customers

Also, consider setting up Image Optimization and Image CDN plugins (guide here) in WordPress and using Cloudflare (guide here)

Benchmarking with SysBench

Install CPU Benchmark

sudo apt-get install sysbench

CPU Benchmark (Vultr/Sydney)

Result

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1

Doing CPU performance benchmark

Threads started!
Done.

Maximum prime number checked in CPU test: 20000


Test execution summary:
    total time:                          39.1700s
    total number of events:              10000
    total time taken by event execution: 39.1586
    per-request statistics:
         min:                                  2.90ms
         avg:                                  3.92ms
         max:                                 20.44ms
         approx.  95 percentile:               7.43ms

Threads fairness:
    events (avg/stddev):           10000.0000/0.00
    execution time (avg/stddev):   39.1586/0.00

39.15 seconds

CPU Benchmark (Digital Ocean/London)

sysbench --test=cpu --cpu-max-prime=20000 run

Result

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1

Doing CPU performance benchmark

Threads started!
Done.

Maximum prime number checked in CPU test: 20000


Test execution summary:
    total time:                          33.4382s
    total number of events:              10000
    total time taken by event execution: 33.4352
    per-request statistics:
         min:                                  3.24ms
         avg:                                  3.34ms
         max:                                  6.45ms
         approx.  95 percentile:               3.45ms

Threads fairness:
    events (avg/stddev):           10000.0000/0.00
    execution time (avg/stddev):   33.4352/0.00

33.43 sec

CPU Benchmark (UpCloud/Singapore)

sysbench --test=cpu --cpu-max-prime=20000 run

Result

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1



Doing CPU performance benchmark

Threads started!
Done.

Maximum prime number checked in CPU test: 20000


Test execution summary:
    total time:                          23.7809s
    total number of events:              10000
    total time taken by event execution: 23.7780
    per-request statistics:
         min:                                  2.35ms
         avg:                                  2.38ms
         max:                                  6.92ms
         approx.  95 percentile:               2.46ms

Threads fairness:
    events (avg/stddev):           10000.0000/0.00
    execution time (avg/stddev):   23.7780/0.00

23.77 sec

Surprisingly, 1st place in prime generation goes to UpCloud, then Digital Ocean then Vultr.  UpCloud has some good processors.

Processors:

  • UpCLoud (Singapore): Intel(R) Xeon(R) CPU E5-2687W v4 @ 3.00GHz
  • Digital Ocean (London): Intel(R) Xeon(R) CPU E5-2630L v2 @ 2.40GHz
  • Vultr (Sydney): Virtual CPU a7769a6388d5 (Masked/Hidden CPU @ 2.40GHz)

(Lower is better)

prime benchmark results

(oops, typo in the chart should say Vultr)

Benchmark the file IO

Confirm free space

df -h /

Install Sysbench

sudo apt-get install sysbench

I had 10GB free on all servers (Vultr, Digitial Ocean and UpCloud) so I created a 10GB test file.

sysbench --test=fileio --file-total-size=10G prepare
sysbench 0.4.12:  multi-threaded system evaluation benchmark

128 files, 81920Kb each, 10240Mb total
Creating files for the test...

Now I can run the benchmark and use the pre-created text file.

sysbench --test=fileio --file-total-size=10G --file-test-mode=rndrw --init-rng=on --max-time=300 --max-requests=0 run

SysBench description from the Ubuntu manpage.

“SysBench is a modular, cross-platform and multi-threaded benchmark tool for evaluating OS parameters that are important for a system running a database under intensive load. The idea of this benchmark suite is to quickly get an impression about system performance without setting up complex database benchmarks or even without installing a database at all.”

SysBench Results (Vultr/Sydney)

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1
Initializing random number generator from timer.


Extra file open flags: 0
128 files, 80Mb each
10Gb total file size
Block size 16Kb
Number of random requests for random IO: 0
Read/Write ratio for combined random IO test: 1.50
Periodic FSYNC enabled, calling fsync() each 100 requests.
Calling fsync() at the end of test, Enabled.
Using synchronous I/O mode
Doing random r/w test
Threads started!
Time limit exceeded, exiting...
Done.

Operations performed:  385920 Read, 257280 Write, 823266 Other = 1466466 Total
Read 5.8887Gb  Written 3.9258Gb  Total transferred 9.8145Gb  (33.5Mb/sec)
 2143.98 Requests/sec executed

Test execution summary:
    total time:                          300.0026s
    total number of events:              643200
    total time taken by event execution: 182.4249
    per-request statistics:
         min:                                  0.01ms
         avg:                                  0.28ms
         max:                                 18.12ms
         approx.  95 percentile:               0.55ms

Threads fairness:
    events (avg/stddev):           643200.0000/0.00
    execution time (avg/stddev):   182.4249/0.00

SysBench Results (Digital Ocean/London)

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1
Initializing random number generator from timer.


Extra file open flags: 0
128 files, 80Mb each
10Gb total file size
Block size 16Kb
Number of random requests for random IO: 0
Read/Write ratio for combined random IO test: 1.50
Periodic FSYNC enabled, calling fsync() each 100 requests.
Calling fsync() at the end of test, Enabled.
Using synchronous I/O mode
Doing random r/w test
Threads started!
Time limit exceeded, exiting...
Done.

Operations performed:  944280 Read, 629520 Write, 2014432 Other = 3588232 Total
Read 14.409Gb  Written 9.6057Gb  Total transferred 24.014Gb  (81.968Mb/sec)
 5245.96 Requests/sec executed

Test execution summary:
    total time:                          300.0024s
    total number of events:              1573800
    total time taken by event execution: 160.5558
    per-request statistics:
         min:                                  0.00ms
         avg:                                  0.10ms
         max:                                 18.62ms
         approx.  95 percentile:               0.34ms

Threads fairness:
    events (avg/stddev):           1573800.0000/0.00
    execution time (avg/stddev):   160.5558/0.00

SysBench Results (UpCloud/Singapore)

sysbench 0.4.12:  multi-threaded system evaluation benchmark

Running the test with following options:
Number of threads: 1
Initializing random number generator from timer.


Extra file open flags: 0
128 files, 80Mb each
10Gb total file size
Block size 16Kb
Number of random requests for random IO: 0
Read/Write ratio for combined random IO test: 1.50
Periodic FSYNC enabled, calling fsync() each 100 requests.
Calling fsync() at the end of test, Enabled.
Using synchronous I/O mode
Doing random r/w test
Threads started!
Time limit exceeded, exiting...
Done.

Operations performed:  994320 Read, 662880 Write, 2121090 Other = 3778290 Total
Read 15.172Gb  Written 10.115Gb  Total transferred 25.287Gb  (86.312Mb/sec)
 5523.97 Requests/sec executed

Test execution summary:
    total time:                          300.0016s
    total number of events:              1657200
    total time taken by event execution: 107.4434
    per-request statistics:
         min:                                  0.00ms
         avg:                                  0.06ms
         max:                                 15.43ms
         approx.  95 percentile:               0.13ms

Threads fairness:
    events (avg/stddev):           1657200.0000/0.00
    execution time (avg/stddev):   107.4434/0.00

Comparison

Sysbench Results table

sysbench fileio results (text)

Read

  • Vultr (Sydney): 385,920
  • Digital Ocean (London): 944,280
  • UpCloud (Singapore): 944,320

Write

  • Vultr (Sydney): 823,266
  • Digital Ocean (London): 629,520
  • UpCloud (Singapore): 662,880

Other

  • Vultr (Sydney): 1,466,466
  • Digital Ocean (London): 3,588,232
  • UpCloud (Singapore): 2,121,090

Total Read Gb

  • Vultr (Sydney): 5.8887 Gb
  • Digital Ocean (London): 14.409 Gb
  • UpCloud (Singapore): 15.172 Gb

Total Written Gb

  • Vultr (Sydney): 3.9258 Gb
  • Digital Ocean (London): 9.6057 Gb
  • UpCloud (Singapore): 10.115 Gb

Total Transferred Gb

  • Vultr (Sydney): 9.8145 Gb
  • Digital Ocean (London): 24.014 Gb
  • UpCloud (Singapore): 25.287 Gb

Now I can remove test file io benchmark file

sysbench --test=fileio --file-total-size=2=10G cleanup
sysbench 0.4.12:  multi-threaded system evaluation benchmark

Removing test files...

Confirm the test file has been deleted

df -h /
Filesystem      Size  Used Avail Use% Mounted on
/dev/vda1        40G   16G   23G  41% /

Bonus: Benchmark MySQL (on my main server (Vultr) not on Digital Ocean and UpCLoud)

I tried to run a command

sysbench --test=oltp --oltp-table-size=1000000 --db-driver=mysql --mysql-db=test --mysql-user=root --mysql-password=#################################### prepare
sysbench 0.4.12:  multi-threaded system evaluation benchmark

FATAL: unable to connect to MySQL server, aborting...
FATAL: error 1049: Unknown database 'test'
FATAL: failed to connect to database server!

To fix the error I created a test table with Adminer (guide here).

Create Test Table

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