Here is how you can install MongoDB 3.4.x on Ubuntu 16.04 and secure it. I use the Studio 3T software form Studio 3T.

Before you install MongoDB ensure you have secured your server and installed it and installed an SSL certificate. Click the links here to set up a Digital Ocean, Vultr or AWS Server. Read my old guide to installing MongoDB on Ubuntu 14.04  and using Studio 3T ( https://studio3t.com/ ).

Install MongoDB 3.6

Official guide here

Add the keyserver

sudo apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv 2930ADAE8CAF5059EE73BB4B58712A2291FA4AD5
Executing: /tmp/tmp.T7UNroLh1A/gpg.1.sh --keyserver
hkp://keyserver.ubuntu.com:80
--recv
2930ADAE8CAF5059EE73BB4B58712A2291FA4AD5
gpg: requesting key 91FA4AD5 from hkp server keyserver.ubuntu.com
gpg: key 91FA4AD5: public key "MongoDB 3.6 Release Signing Key <[email protected]>" imported
gpg: Total number processed: 1
gpg:               imported: 1  (RSA: 1)

echo "deb [ arch=amd64,arm64 ] https://repo.mongodb.org/apt/ubuntu xenial/mongodb-org/3.6 multiverse" | sudo tee /etc/apt/sources.list.d/mongodb-org-3.6.list
deb [ arch=amd64,arm64 ] https://repo.mongodb.org/apt/ubuntu xenial/mongodb-org/3.6 multiverse

Update

sudo apt-get update

Install the latest stable version of MongoDB

sudo apt-get install -y mongodb-org

MongoDB.conf options

FYI: Secure MongoDB: https://docs.mongodb.com/manual/security/ and Security Checklist https://docs.mongodb.com/manual/administration/security-checklist/

MongoDB Hardening Info: https://docs.mongodb.com/manual/core/security-hardening/

Start Mongodb

sudo mongod --port 27017 --dbpath /mongodb_data/ --bind_ip 127.0.0.1 --config /etc/mongod.conf

You should see startup activity

sudo mongod --port 27017 --dbpath /mongodb_data/
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] MongoDB starting : pid=10413 port=27017 dbpath=/mongodb_data/ 64-bit host=ypurservername
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] db version v3.6.2
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] git version: 489d177dbd0f0420a8ca04d39fd78d0a2c539420
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] OpenSSL version: OpenSSL 1.0.2g  1 Mar 2016
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] allocator: tcmalloc
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] modules: none
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] build environment:
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten]     distmod: ubuntu1604
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten]     distarch: x86_64
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten]     target_arch: x86_64
2018-01-16T22:46:22.924+1100 I CONTROL  [initandlisten] options: { net: { port: 27017 }, storage: { dbPath: "/mongodb_data/" } }
2018-01-16T22:46:22.925+1100 I STORAGE  [initandlisten]
2018-01-16T22:46:22.925+1100 I STORAGE  [initandlisten] wiredtiger_open config: create,cache_size=1463M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),statistics_log=(wait=0),verbose=(recovery_progress),
2018-01-16T22:46:23.012+1100 I CONTROL  [initandlisten]
2018-01-16T22:46:23.014+1100 I STORAGE  [initandlisten] createCollection: admin.system.version with provided UUID: *******
2018-01-16T22:46:23.026+1100 I COMMAND  [initandlisten] setting featureCompatibilityVersion to 3.6
2018-01-16T22:46:23.033+1100 I STORAGE  [initandlisten] createCollection: local.startup_log with generated UUID: d4271258-e51f-407d-af15-975f61e66eaf
2018-01-16T22:46:23.049+1100 I FTDC     [initandlisten] Initializing full-time diagnostic data capture with directory '/mongodb_data/diagnostic.data'
2018-01-16T22:46:23.050+1100 I NETWORK  [initandlisten] waiting for connections on port 27017

In a new terminal window open a MongoDB process

mongo --port 27017 --authenticationDatabase 'admin' --username username --password password
>...
>

Create a user

> use admin
switched to db admin
> db.createUser(
...   {
...     user: "yourdbuser",
...     pwd: "**************************************************************",
...     roles: [ { role: "userAdminAnyDatabase", db: "admin" } ]
...   }
... )
Successfully added user: {
        "user" : "yourdbuser",
        "roles" : [
                {
                        "role" : "userAdminAnyDatabase",
                        "db" : "admin"
                }
        ]
}
>

Create a test db

show dbs
use testdb
s = { Name : "Test Value" }
{ "Name" : "Test Value" }
db.testdb.insert( s );
WriteResult({ "nInserted" : 1 })
db.testdb.find()
{ "_id" : ObjectId("5a5deba7b563981038f32051"), "Name" : "Test Value" }

Run MongoDB at Startup

Note: I tried setting up a service but it failed so I added the following command to /etc/rc.local

/usr/bin/mongod --quiet --port 27017 --dbpath /mongodb_data/ --bind_ip 127.0.0.1,##.##.##.## --config /etc/mongod.conf

Todo: Service Setup.

Ignore the following….

Create a service

sudo nano /etc/systemd/system/mongodb.service

I added

[Unit]
Description=High-performance, schema-free document-oriented database
After=network.target

[Service]
User=mongodb
ExecStart=/usr/bin/mongod --quiet --port 27017 --dbpath /mongodb_data/ --bind_ip 127.0.0.1,##.##.##.## --config /etc/mongod.conf

[Install]
WantedBy=multi-user.target

TIP: Bing to local 127.0.0.1 and also your external IP (if you have hardened and setup IP whitelists for the port).

Make /etc/init.d/mongod executable

sudo chmod +x /etc/init.d/mongod

Firewall

Configure your firewall (tip: whitelist your local development IP to allow your IP access etc)

sudo ufw allow from 123.123.123.12/32 to any port 27017
Rule added

sudo ufw reload
Firewall reloaded

sudo ufw allow out 27017
Rule added
Rule added (v6)

Reload the firewall and show the status. Add port 27017 (or your custom port) to your TCP and UDP firewall. http://icanhazip.com/ will display your public IP.

sudo ufw reload
sudo ufw status
Status: active

To                         Action      From
--                         ------      ----
...
27017                      ALLOW       123.123.123.123
...
27017                      ALLOW OUT   Anywhere
...

Display the MongoDB version

mongod -version
db version v3.6.2
git version: 489d177dbd0f0420a8ca04d39fd78d0a2c539420
OpenSSL version: OpenSSL 1.0.2g 1 Mar 2016
allocator: tcmalloc
modules: none
build environment:
 distmod: ubuntu1604
 distarch: x86_64
 target_arch: x86_64

Make MongoDB configuration changes

sudo nano /etc/mongod.conf

– Consider saving your database data somewhere else (mongodb.conf)

storage:
  dbPath: /folder_to_store_mongodb_data/

– Consider redirecting your log file (mongodb.conf)

systemLog:
  destination: file
  logAppend: true
  path: "/folder_to_store_mongodb_logs/mongo.log"

– Consider changing the default MongoDB port (mongodb.conf)

net:
  port: 27123

– Allow MongoDB to talk locally and globally if need be and optionally enable IPV6 (binding IP’s in mongodb.conf)

TIP: Ensure you bind you localhost port (127.0.0.1) AND your public IP (e.g 123.123.123.123) as you will need to bind to public IP too if you want to connect to MongoDB externally.  I did not bing my eternal IP and was blocked for a few days.

net:
  ipv6: true
  bindIp: 127.0.0.1,123.123.123.123

If you allow external access then consider whitelisting your IP and disabling local admin login – more here  (mongodb.conf)

setParameter:
   enableLocalhostAuthBypass: false

Official configuration documentation can be found here.

At this stage, MongoDB is open to the world and if you connect to your server with no username or password you will see it is open.

I created an admin user with Studio 3T for MongoDB in the IntelliShell.

I typed the following to create a user (I added a root role after creating the screenshot above).

use admin
db.createUser({user: "yourusername", pwd: "yourpassword", roles:[{role: "userAdminAnyDatabase", db: "admin"},{role: "root", db: "admin"}]})

Verify that the user was created

show users
{ 
    "_id" : "admin.yourusername", 
    "user" : "yourusername", 
    "db" : "admin", 
    "roles" : [
        {
            "role" : "root", 
            "db" : "admin"
        }, 
        {
            "role" : "userAdminAnyDatabase", 
            "db" : "admin"
        }
    ]
}

Now you can use these credentials to log in to the database.

You can see the new credentials are working and now we need to remove anonymous and empty connections.

Add the following to mongodb.conf

security:
 authorization: enabled

Restart MongoDB

sudo systemctl stop mongodb
sudo systemctl start mongodb

or

/usr/bin/mongod --config /etc/mongod.conf

Now when you connect to your database with no login details you will see no databases.

Show the status of MongoDB

sudo systemctl start mongodb
[email protected]:~# sudo systemctl status mongodb
● mongodb.service - High-performance, schema-free document-oriented database
   Loaded: loaded (/etc/systemd/system/mongodb.service; enabled; vendor preset: enabled)
   Active: active (running) since Fri 2017-08-18 18:00:38 AEST; 4 days ago
 Main PID: 6946 (mongod)
    Tasks: 19
   Memory: 76.3M
      CPU: 57min 16.367s
   CGroup: /system.slice/mongodb.service
           └─6946 /usr/bin/mongod --quiet --config /etc/mongod.conf

View the last 20 lines of the MongoDB log file.

tail -n 20 /var/log/mongodb/mongod.log

(or replace the path with your log location)

tail -n 20 /yourmongodb_logs/mongod.log

Viewing MongoDB files

ls -al
total 384
drwxr-xr-x 4 root root 4096 Sep 5 18:12 .
drwxr-xr-x 30 root root 4096 Aug 5 18:48 ..
-rw-r--r-- 1 root root 32768 Sep 5 18:12 collection-0--5805649544981213952.wt
-rw-r--r-- 1 root root 36864 Sep 5 18:12 collection-0-6117837641988028070.wt
-rw-r--r-- 1 root root 32768 Sep 5 18:12 collection-2-6117837641988028070.wt
drwxr-xr-x 2 root root 4096 Sep 5 18:12 diagnostic.data
-rw-r--r-- 1 root root 16384 Sep 5 18:47 index-1--5805649544981213952.wt
-rw-r--r-- 1 root root 36864 Sep 5 18:12 index-1-6117837641988028070.wt
-rw-r--r-- 1 root root 32768 Sep 5 18:12 index-3-6117837641988028070.wt
-rw-r--r-- 1 root root 32768 Sep 5 18:47 index-4-6117837641988028070.wt
drwxr-xr-x 2 root root 4096 Sep 5 18:03 journal
-rw-r--r-- 1 root root 32768 Sep 5 18:12 _mdb_catalog.wt
-rw-r--r-- 1 root root 0 Sep 5 18:12 mongod.lock
-rw-r--r-- 1 root root 36864 Sep 5 18:12 sizeStorer.wt
-rw-r--r-- 1 root root 95 Sep 5 18:18 storage.bson
-rw-r--r-- 1 root root 49 Sep 5 18:18 WiredTiger
-rw-r--r-- 1 root root 4096 Sep 5 18:12 WiredTigerLAS.wt
-rw-r--r-- 1 root root 21 Sep 5 18:18 WiredTiger.lock
-rw-r--r-- 1 root root 996 Sep 5 18:12 WiredTiger.turtle
-rw-r--r-- 1 root root 61440 Sep 5 18:12 WiredTiger.wt

MongoDB Users and Roles

More on securing MongoDB here and here.

Remove MongoDB

sudo apt-get remove --purge mongodb-org

Remove MongoDB files

cd /mongodb_data_folder/
rm -R *.*
rm -R WiredTiger
rm -R journal

Remove MongoDB

sudo rm /var/lib/mongodb/mongod.lock
sudo apt-get purge mongodb mongodb-clients mongodb-server mongodb-dev
sudo apt-get purge mongodb-10gen
sudo apt-get autoremove

I had these warnings with MongoDB 3.2

I CONTROL  [initandlisten] ** WARNING: /sys/kernel/mm/transparent_hugepage/enabled is 'always'.
I CONTROL  [initandlisten] **        We suggest setting it to 'never'

I ran this fix.

Installing MongoDB on Ubuntu 16.04 guide here.  More on SSL and MongoDB here.

todo: MongoDB Startup at reboot troubleshooting steps.

Good luck.

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v1.6 Added MongoDB 3.6 install info and strat at startup

v1.5 MongoDB troubleshooting